| Previous changeset 2:42c4463baaad (2014-01-16) Next changeset 4:df86f29bedee (2015-07-21) |
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Commit message:
Uploaded complex repository dependency for bowtie 0.12.7. |
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modified:
tool_dependencies.xml |
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| diff -r 42c4463baaad -r 9ca609a2a421 tool_dependencies.xml --- a/tool_dependencies.xml Thu Jan 16 13:08:38 2014 -0500 +++ b/tool_dependencies.xml Fri Feb 21 12:40:39 2014 -0500 |
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| @@ -1,30 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="bowtie" version="0.12.7"> - <install version="1.0"> - <actions> - <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie/0.12.7/bowtie-0.12.7-src.zip</action> - <action type="shell_command">make</action> - <action type="move_file"> - <source>bowtie</source> - <destination>$INSTALL_DIR/bin</destination> - </action> - <action type="move_file"> - <source>bowtie-build</source> - <destination>$INSTALL_DIR/bin</destination> - </action> - <action type="move_file"> - <source>bowtie-inspect</source> - <destination>$INSTALL_DIR/bin</destination> - </action> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - <readme> -Compiling Bowtie requires libpthread to be present on your system. - </readme> + <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> - |