| Previous changeset 2:d6f39c80e75b (2015-07-17) Next changeset 4:c8f7a7d73466 (2015-12-31) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty |
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modified:
tool_dependencies.xml |
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| diff -r d6f39c80e75b -r 9cc1138e5e3e tool_dependencies.xml --- a/tool_dependencies.xml Fri Jul 17 10:41:25 2015 -0400 +++ b/tool_dependencies.xml Fri Oct 02 09:10:47 2015 -0400 |
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| @@ -1,36 +1,33 @@ <?xml version="1.0"?> <tool_dependency> - <package name="atlas" version="3.10.2"> - <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="python" version="2.7"> - <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="numpy" version="1.9"> - <install version="1.0"> - <actions> - <action type="set_environment_for_install"> - <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="atlas" version="3.10.2" /> - </repository> - </action> - <action type="setup_python_environment"> - <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="python" version="2.7" /> - </repository> - <!-- allow downloading and installing an Python package from https://pypi.org/ --> - <package>https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz#md5#78842b73560ec378142665e712ae4ad9</package> - </action> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> - <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable> - <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> - <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable> - </action> - </actions> - </install> - <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme> - </package> + <package name="atlas" version="3.10.2"> + <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="numpy" version="1.9"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.0.tar.gz#md5#510cee1c6a131e0a9eb759aa2cc62609</action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="set_environment_for_install"> + <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="atlas" version="3.10.2" /> + </repository> + </action> + <action type="shell_command"> + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && + export ATLAS=$ATLAS_ROOT_PATH && + python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> + <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme> + </package> </tool_dependency> |