| Previous changeset 3:88b89f435f6a (2018-06-05) Next changeset 5:a0a30c52978a (2018-06-11) |
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Commit message:
Replaces Rscript by R CMD BATCH |
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modified:
exomedepth.R |
| b |
| diff -r 88b89f435f6a -r 9ccde1867fbb exomedepth.R --- a/exomedepth.R Tue Jun 05 18:58:08 2018 -0400 +++ b/exomedepth.R Mon Jun 11 09:32:44 2018 -0400 |
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| @@ -3,7 +3,8 @@ # Import parameters from xml wrapper (args_file) args <- commandArgs(trailingOnly=TRUE) -param <- read.table(args[1],sep="=", as.is=TRUE) +eval(parse(text=args[[1]])) +param <- read.table(mypars,sep="=", as.is=TRUE) # Set common parameters target <- param[match("target",param[,1]),2] |