| Previous changeset 2:cf4229cd0a05 (2023-06-08) Next changeset 4:051ac848cd6b (2024-06-03) |
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Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control commit 389df0134cd0763dcf02aac6e623fc15f8861c1e |
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modified:
qiime2__quality_control__exclude_seqs.xml |
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| diff -r cf4229cd0a05 -r 9d29d1b06e2c qiime2__quality_control__exclude_seqs.xml --- a/qiime2__quality_control__exclude_seqs.xml Thu Jun 08 19:50:53 2023 +0000 +++ b/qiime2__quality_control__exclude_seqs.xml Thu Apr 25 21:19:02 2024 +0000 |
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| @@ -1,24 +1,24 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2023, QIIME 2 development team. +Copyright (c) 2024, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2023.5.0) + q2galaxy (version: 2024.2.1) for: - qiime2 (version: 2023.5.1) + qiime2 (version: 2024.2.0) --> -<tool name="qiime2 quality-control exclude-seqs" id="qiime2__quality_control__exclude_seqs" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 quality-control exclude-seqs" id="qiime2__quality_control__exclude_seqs" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> <description>Exclude sequences by alignment</description> <requirements> - <container type="docker">quay.io/qiime2/core:2023.5</container> + <container type="docker">quay.io/qiime2/amplicon:2024.2</container> </requirements> <version_command>q2galaxy version quality_control</version_command> <command detect_errors="exit_code">q2galaxy run quality_control exclude_seqs '$inputs'</command> <configfiles> - <inputs name="inputs" data_style="paths"/> + <inputs name="inputs" data_style="staging_path_and_source_path"/> </configfiles> <inputs> <param name="query_sequences" type="data" format="qza" label="query_sequences: FeatureData[Sequence]" help="[required] Sequences to test for exclusion"> @@ -42,7 +42,6 @@ <param name="perc_identity" type="float" min="0.0" max="1.0" value="0.97" label="perc_identity: Float % Range(0.0, 1.0, inclusive_end=True)" help="[default: 0.97] Reject match if percent identity to reference is lower. Must be in range [0.0, 1.0]"/> <param name="evalue" type="float" optional="true" label="evalue: Float" help="[optional] BLAST expectation (E) value threshold for saving hits. Reject if E value is higher than threshold. This threshold is disabled by default."/> <param name="perc_query_aligned" type="float" value="0.97" label="perc_query_aligned: Float" help="[default: 0.97] Percent of query sequence that must align to reference in order to be accepted as a hit."/> - <param name="threads" type="integer" min="1" value="1" label="threads: Int % Range(1, None)" help="[default: 1] Number of jobs to execute. Only applies to vsearch method."/> <param name="left_justify" type="select" label="left_justify: Bool % Choices(False)¹ | Bool²" help="[default: No] Reject match if the pairwise alignment begins with gaps"> <option value="__q2galaxy__::literal::False" selected="true">No (Bool)</option> <option value="__q2galaxy__::literal::True">Yes (Bool)</option> |