| Previous changeset 0:12870a79d56b (2024-07-26) |
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Commit message:
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/marine_omics commit 9dff0476530d65342db00896f3108edb899e3fd2 |
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modified:
sanntis.xml |
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added:
test-data/BGC0001472.fna test-data/Regex_Find_And_Replace_on_data_21.fasta test-data/Sanntis_output_data.genbank |
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| diff -r 12870a79d56b -r 9d689f8c9ce4 sanntis.xml --- a/sanntis.xml Fri Jul 26 14:31:32 2024 +0000 +++ b/sanntis.xml Thu Aug 08 11:58:48 2024 +0000 |
| [ |
| @@ -2,7 +2,7 @@ <description>in genomic and metagenomic data</description> <macros> <token name="@TOOL_VERSION@">0.9.3.5</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> </macros> <edam_topics> <edam_topic>topic_3387</edam_topic> @@ -11,21 +11,49 @@ <requirement type="package" version="@TOOL_VERSION@">sanntis</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ - sanntis --ip-file '$input_interpro' --outfile 'output_sanntis.gff' '$input_genbank' + #if $selection.which_sanntis == 'sanntis': + sanntis --ip-file '$selection.input_interpro' --outfile 'output_sanntis.gff' '$selection.input_genbank' + #else: + sanntis_build_gb -n '$selection.input_nuc' -a '$selection.input_prot' -o 'output_sanntis_gb.gb' + #end if ]]></command> <inputs> - <param name="input_interpro" type="data" format="tabular" label="Input the TSV file from InterProScan" help="Before using this tool you need to retrieve the right data by using the InterProScan tool"/> - <param name="input_genbank" type="data" format="genbank" label="Input a Genbank .gb file" help="It needs to have the right structure and fit the protein fasta file used in InterProScan"/> + <conditional name="selection"> + <param name="which_sanntis" type="select" label="Do you want to build a genbank or to make a SMBGC Annotation?" help="If you decide to build a genbank you can then use this genbank to then conduct the annotation."> + <option value="sanntis">Run sanntis</option> + <option value="genbank">Build genbank</option> + </param> + <when value="sanntis"> + <param name="input_interpro" type="data" format="tabular" label="Input the tabular file from InterProScan" help="Before using this tool you need to retrieve the right data by using the InterProScan tool"/> + <param name="input_genbank" type="data" format="genbank" label="Input a Genbank file" help="It needs to have the right structure and fit the protein fasta file used in InterProScan"/> + </when> + <when value="genbank"> + <param name="input_nuc" type="data" format="fasta" label="Input a nucleotide fasta file"/> + <param name="input_prot" type="data" format="fasta" label="Input a protein fasta file" help="Before using this tool you can get the right protein data by using the Prodigal tool"/> + </when> + </conditional> </inputs> <outputs> - <data name="output_sanntis" from_work_dir="output_sanntis.gff" format="gff3" label="Sanntis output data"/> + <data name="output_sanntis" from_work_dir="output_sanntis.gff" format="gff3" label="Sanntis output data"> + <filter>selection['which_sanntis'] == 'sanntis'</filter> + </data> + <data name="output_sanntis_gb" from_work_dir="output_sanntis_gb.gb" format="genbank" label="Sanntis output data genbank"> + <filter>selection['which_sanntis'] == 'genbank'</filter> + </data> </outputs> <tests> <test expect_num_outputs="1"> + <param name="which_sanntis" value="sanntis"/> <param name="input_interpro" value="BGC0001472.fna.prodigal.faa.ip.tsv"/> <param name="input_genbank" value="BGC0001472.fna.prodigal.faa.gb"/> <output name="output_sanntis" value="Sanntis_output_data.gff3"/> </test> + <test expect_num_outputs="1"> + <param name="which_sanntis" value="genbank"/> + <param name="input_nuc" value="BGC0001472.fna"/> + <param name="input_prot" value="Regex_Find_And_Replace_on_data_21.fasta"/> + <output name="output_sanntis_gb" value="Sanntis_output_data.genbank"/> + </test> </tests> <help><![CDATA[ @@ -36,6 +64,10 @@ SMBGC Annotation using Neural Networks Trained on Interpro Signatures Tool for identifying biosynthetic gene clusters (BGCs) in genomic & metagenomic data +**Or** + +This tool can also create a Genbank adapted to be used in sanntis + ..... |
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| diff -r 12870a79d56b -r 9d689f8c9ce4 test-data/BGC0001472.fna --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/BGC0001472.fna Thu Aug 08 11:58:48 2024 +0000 |
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| b'@@ -0,0 +1,2 @@\n+>BGC0001472\n+GCCCCGGGGGCCGTCGCTCCGGGGGTCGGTCCTGCCCGGTGGCGCAGGACCACGGGGGCCGGGGCCCGGGGGTGGACGGCATTTGTTTTGACCCAGCTCCGTGAGGTAGGTACGCTCAAGCCTTGTGCCTGGGGTGTGCCTGGGCTCGGGTGCGTGTCCTCAACCGCATGGCGAGTCCGTAAGTGGCCACCGCAATCTGTGTTCCGTCTGCCTTCCAGCAGGGGCGTGCAGTATTCGACACACCCGACCGCGTGGGTCGGTGACTGTTCCAGGTTAGTTTCACCGAACGGCACACAGAAACCGGAGAAGTAGTGCCTACGATCCAGCAGCTGGTCCGGAAGGGCCGGCAGGACAAGGTCGAGAAGAACAAGACGCCCGCGCTCGAGGGTTCGCCCCAGCGTCGTGGTGTCTGCACGCGTGTGTTCACGACCACCCCGAAGAAGCCGAACTCGGCGCTCCGTAAGGTCGCGCGTGTGCGTCTGACCTCCGGTATCGAGGTCACGGCCTACATCCCGGGTGAGGGGCACAACCTGCAGGAGCACTCCATCGTGCTCGTGCGTGGTGGCCGTGTGAAGGACCTGCCGGGTGTTCGTTACAAGATCATCCGCGGTTCGCTCGACACCCAGGGTGTCAAGAACCGCAAGCAGGCCCGCAGCCGCTACGGCGCCAAGAAGGAGAAGTAAGAATGCCTCGTAAGGGCCCCGCCCCGAAGCGCCCGGTCATCATCGACCCGGTCTACAGCTCTCCTCTTGTCACCTCGCTGATCAACAAGATCCTGCTCGACGGCAAGCGTTCCACCGCCGAGCGGATCGTGTACGGCGCCATGGAAGGCCTCCGCGAGAAGACCGGCGCTGACCCGGTCATCACGCTGAAGCGCGCGCTTGAGAACGTCAAGCCCTCGCTCGAGGTCAAGTCCCGCCGTGTCGGTGGCGCCACCTACCAGGTGCCGATCGAGGTCAAGCCCGGTCGCGCCGCCACCCTCGCTCTGCGCTGGGTCGTGGGTTACTCCCGCGCCCGTCGCGAGAAGACCATGACCGAGCGCCTCATGAACGAGCTGCTCGACGCCTCCAACGGTCTTGGCGCTGCCGTCAAGAAGCGCGAGGACACCCACAAGATGGCCGAGTCGAACAAGGCCTTCGCGCACTACCGCTGGTAGTCGCTCACCCCATCGAGACCGAGAGAAGATTGAGCCTTATGGCCACCACTTCGCTTGACCTGGCCAAGGTCCGCAACATCGGGATCATGGCCCACATCGACGCGGGCAAGACGACCACCACCGAGCGGATCCTCTTCTACACCGGCGTTTCGTACAAGATCGGTGAAGTCCACGACGGCGCAGCCACGATGGACTGGATGGAGCAGGAGCAGGAGCGCGGCATCACGATCACGTCCGCCGCGACGACCTGTCACTGGCCGCTCAATGATGTTGACCACACCATCAACATCATCGACACCCCGGGTCACGTCGACTTCACCGTCGAGGTGGAGCGTTCGCTCCGCGTCCTCGACGGTGCCGTCACCGTGTTCGACGGTGTGGCCGGCGTCGAGCCCCAGTCCGAGACCGTCTGGCGTCAGGCGGACCGCTACGGCGTGCCGCGTATCTGCTTCGTCAACAAGCTCGACCGCACGGGCGCCGACTTCCTCCGTTGCGTCGACATGATCGTCCAGCGCCTCGGCGCTGTCCCGATCGTCATGCAGCTCCCCATCGGTGCGGAGGCTGACTTCCGCGGCGTCGTCGACCTCGTGTCGATGAAGGCCTTCGTTTACCCCGAAGAGGCCGTCAAGGGCGAGATGTACGACACCGTCGAGATCCCGGACAACCTCAAGGAGGCCGCCGAGGAATGGCGCGGCAAGCTCCTCGAGGCCGTCTCGGAGAACGACGACCAGATGATGGAGCTGTACCTCGAGGGCGAAGAGCCCACCGAGGAGCAGCTGCACGAGGCGATCCGTCGGATCACCCTCGCGTCGAAGGGCTCGGCCGACTCCGTCACCGTGACCCCCGTCTTCTGTGGCACGGCGTTCAAGAACAAGGGCGTCCAGCCCCTGCTCGACGCCGTCGTCCGCTACCTGCCTTCCCCCCTGGACGTCGAGGCCATCGAGGGCCACGACGTCAAGGACCCGGAGAAGGTCGTCCAGCGGAAGCCCTCGGACGACGAGCCGTTCTCCGGCCTGGCGTTCAAGATCGCGAGCGACCCGCACCTCGGCAAGCTCACCTTCGTCCGGATCTACTCCGGTCGCCTCGAGGCCGGCACCGCGGTGCTGAACTCGGTCAAGGGCAAGAAGGAGCGCATCGGCAAGATCTACCGCATGCACGCGAACAAGCGTGAGGAGATCCCGTCGGTGGGCGCCGGTGACATCGTCGCCGTCATGGGCCTGAAGCAGACCACCACCGGTGAGACGCTGTGTGACGACAAGAACCCGGTGATCCTGGAGTCCATGGACTTCCCGGCGCCGGTCATCCAGGTCGCCATCGAGCCCAAGTCCAAGGGTGACCAGGAGAAGCTGGGTGTCGCCATCCAGCGCCTCTCGGAGGAGGACCCCTCCTTCCAGGTGCACTCCGACGAGGAGACCGGCCAGACCATCATCGGTGGTATGGGCGAGCTTCACCTCGAGGTGCTCGTCGACCGCATGAAGCGCGAGTTCCGCGTCGAGGCGAACGTCGGCAAGCCGCAGGTCGCGTACCGTGAGACGATCCGCAAGGCCGTCGAGCGTATCGACTACACGCACAAGAAGCAGACTGGTGGTACCGGCCAGTTCGCGAAGGTGCAGATCGCCATCGAGCCCATCGAGGGTGGCGACGCGTCCTACGAGTTCGTCAACAAGGTCACCGGTGGCCGCATCCCCCGTGAGTACATTCCCTCGGTGGACGCGGGTGCCCAGGAAGCCATGCAGTTCGGCATCCTGGCCGGCTACGAGATGGTGGGCGTCCGCGTCACCCTTCTCGACGGTGGTTACCACGAGGTCGACTCCTCGGAGCTCGCCTTCAAGATCGCTGGTTCGCAGGCGTTCAAGGAGGGTGCCCGCAAGGCGTCCCCCGTGCTCCTCGAGCCGATGATGGCCGTCGAGGTCACCACACCCGAGGACTACATGGGTGAAGTGGTCGGCGACATCAACTCCCGCCGTGGCCAGATCCAGGCCATGGAGGAGCGCCACGGCGCTCGCGTCGTGAAGGGCCTCGTGCCCCTCTCGGAGATGTTCGGCTACGTCGGAGACCTCCGCAGCAAGACCTCGGGTCGCGCAAGCTACTCGATGCAGTTCGACTCCTACGCCGAGGTTCCGCGGAACGTCGCCGAGGAGATCATCGCGAAGGCCAAGGGCGAGTAACTCTTCCGAGCTCACGCTTTAGGCTTGTCACCGGAGCCCGGTCGGGCATGCGTCGCAGTGCGGCGGATGCCCCCGGCACCGGCATTCCAGCAAAGATCACCTGGCGCCGATGAAGCAAGGCGTACAGAACCACTCAGGAGGACCCCAGTGGCGAAGGCAAAGTTCGAGCGGACTAAGCCGCACGTCAACATCGGCACCATCGGTCACATCGACCACGGTAAGACGACCCTCACGGCCGCCATTACCAAGGTGCTGCACGACGCGTACCCGGACCTGAACGAGGCCTCGGCCTTCGACCAGATCGACAAGGCTCCTGAGGAGCGTCAGCGCGGTATCACGATCTCGATCGCGCACGTCGAGTACCAGACGGAGTCGCGTCACTACGCGCACGTCGACTGCCCGGGTCACGCTGACTACATCAAGAACATGATCACGGGTGCGGCGCAGATGGACGGCGCCATCCTCGTGGTCGCGGCCACCGACGGCCCGATGCCGCAGACCAAGGAGCACGTGCTCCTGGCCCGCCAGGTAGGCGTGCCGTACATCGTCGTCGCGCTGAACAAGGCCGACATGGTGGACGACGAGGAGATCCTGGAGCTCGTCGAGCTCGAGGTCCGTGAGCTCCTCTCCGAGTACGAGTTCCCG'..b'GCCCCTCGCCGGCGAGCATGGAGGAGATGCACTCGTCCACGATCTCCTCGACGCGGGGACGCAGTTGGAGCACCCGCTTGACGGTGAACTCCGGGATCACCATCTTGCGCTGCGCCGTGTGTACGGGCGGGTCCATGGCGAGCAGCACGGGCCGCATCTGCTCCATGACCTCCGGCGGCGCATCGAAGTGGAGTGGATAGCCCGGGTGGGCCAGGTTCGAGCTCACATGAGGGTCGGCGAGCAACTGTCGTATGTGCTCGTGCCGGGTGAGCAGCCACGCGGTCCGCCCGGAGGCCAGAGTGACCTTGGTGATCGGCTGCTCGGCACGCAGGGACGCGTACTCCTTCGGCGGGTGGAGCGGGCAGGTCCTGGGGTAGGGATACGCGCTGTCCTGTCGGTCCGTCACGGTCTTCTCCGCGGGTAGTCCAGGGAAATCTCCTTACGGACTCCATTCAAGCGGAAGATGATCCACATCGTGGCGTTATCGGTGAATGAGGCCGAACTCACGTGGACCGCAGGGAGGAAAGTCGGCCGCCTTCCCGGCATGGCCCGTCCCGTGCTTTCGGTGGGAGGGGTCGGTGCAGTGCGACATTGCAGTGATCGCGTAATCCGGAATGACCCCTTCCGTGCGGGGATGCGTCGATAGTACGTTGGATTTCATGTGCTCCACATCGTGGAGAGTTCGCTTGCGCCGTCGAAGTCACAGTGTGTGCCGAGGGGGAGTTGGGGCTATGTACCTTTCGATCGTCATGTGGGACCTGAAGAAGTCGGAAGCCACGGTGGAGAGCCTCAGGGAATACCTGCGGGACTATGCCGTGGACGCCTACTCCGCGCTGGACGGAATGCGGCTCAAGGCGTGGTTCTCCGATTCCGCACGTCAGCTGTGGGGTGCGGTCTATCTGTGGGACAGCCCCGAGCAGATGCCCGGCCTGTACAAAGTCAGCCGCGTGATCGATCTCATCGGGTATCCGCCGACTTCGGTCGGTGGTTTCACGCTCGAGGCGACCGCCGAAGGGAAGAGCGTTCACGAGACACTGGCCGGCCTGGGGATCGCCCTGGAGGGCGGAACGCAGTAAGGGCAGGCGTGCGACCGGATGGGCGGGAGGTTTGCCGGGCCGGTCGGTTCGAGGGGCGGTCGAGGGCCGGAGCCGCGCGGGTGGCTTCGCCGCTCCGGCTGGCGGCCGGGTGTGGAGTGCCGCGCGGCGCCGGTGTCGCCCGCGCCGGGCATCACCGTGCTCGCGGAGGGTTCAGGTGTGTCGGACCGGCGCTTTCGCGTGTGTTCGGCACCGTCCGGTGGGCCGGGTGCTGTGCGCGGGCCTCGAGCTCCCGGGCGGGCGCGGTGCGCAGGCCCTCCCCGCCCGGACACGCGTATTCCGCACCGCTTCACGAAGATCATTCGGTGAAGGAGGCGGGGGCGCTCGTGCTAACGTCGTGATCGTGGCCAGCCTTGACATTATTACCGAACGCTCTGATTCTGCCGTACAACGCATCATCGATGTGACAAAGCATTCGAGGTCCGTTGTCCGCACGGTGCTGATCGAGGACATCGAGCCTCTTCTGCAGAGCATCCGTGCCGGAGTGGAATTCATCGAGATCTACGGACTCGACACCGTGCCTGTTCCGGACAGTCTGCTCGCCGAATGTGAACGGCGCAGAATTCCGGTCCGGCTGCTCGCCGCTTCGGTCGCCAATCAGGTCTTCAAGACCGAGAAGAAGCCCAAGGTATTCGGTATCGCCAAGGTCCCGCGGCCTCGTCGCCTGTCGGACCTGTCCGACATGACCGGTGACCTCATCCTGCTCGACGGAGTGAAGATCGTCGGCAATATCGGAGCCATCGTGCGGACCTCGTTCGCGCTCGGGGCCTCGGGAATCGTGCTCGTGGACAGCGATCTCGGCAGTATTGCGGACCGCCGTCTGATCAGGGCGAGCCGGGGCTATGTGTTCTCCCTTCCCATCGTTCTCGCGTCCCGGGCCGAGGCGCTCCAGTACTTCCAGGACAATGCGATGCGCCCGGTGGTGTTCGAGGCCGACGGGGATCTCGGCGTCGCTGATCTCGACGGTATGGACGAGCGACTTGTGCTCATGTTCGGCAGCGAGAGGATCGGCCCGTCGGGCGAGTTCTCCGACATCGCCGCCAAGTCGGTCTCCATTCCGATGAATCCCGCGGCCGAGTCCCTCAACGTATCGGTGTCGGCCGGAATCGCGCTGCACGCGAGGGCCCGCCGTAACCTCTCCCGGTAGTCCCGGCCGCAGAGCCCCGTCAAGGGCCCCGTCCCTCCCCTCCGGGAGGGGCGGGGCCCTTGACGTGCGCCGCCGGGAGCCCTCGCTACCGCGGCCGCCACATCCAGGGCGCCGCGTCCGGACCCAGGCCGGCGACCGAAGGCCGGCCGTCCGGGCCCAGGCGGAGCGAGGCCCCGTCCAGGGCGGCCGGCCCGTCGGTCCGCACGTGGAGCCCGCCGCCCATGAGCAGCTGGACGAGGCCCTCGGCGGTGCGGCCCAGCAGCACGGGCCCCCGCGGCGACGGGGCGGCGTCCACCGNNCCGTACCCGTCGAACCGTGCTCCGGGCACGGCCGTCCCCGCCCGAGCCGTGGTCAGCCCGCTCCCGGCCGCTGCCCGGTAGTAGAGGGACACGGACCCGTCGGGAGCCGGGAGGGCGGCCGGCGCGTGGGCCGGGACGGGCGCCGCCGTGAGCTGTGTGCGAGCCGTGAGCCCGGCGGACGGGGTGTCCTGGGTCCAGTGGTGTACGGCGTGGTGGCCGGCGCCGAAGACGTGGACGCGTCCACCCTCGTCCACGGCGGTGTGCAGGCCGTCCTGCACCTCTCCGCCGCCCATGTCCCGCCACGCGCTCCACCGCCCCGCCCCGTCCCGCACCCGGGTGCTGACGCCCTTCTCGGCGTCGCGTACGAAGAGATGGATCTGCCCGTCCGGAGCGGCGACGGCCACCGGTACGCCCGTGCGACGTACTTCGTCACGTCCGGGAGAAGGAGAGCCCAGGCCGCGCCAGGGGCGGAAGCCCCGGCCCGGGGCGCTCTGCTCCAGCACCACGATCTCGCGCTCGTTGTCGGCGCCGTGCCCGCCGAGTGCGGCGAAGCGGAGCCCGAACAGCAGCAGGCGCCCGTCCCGTGTGGTGGCCGAGCCCAGTGCGGGGGCGAGCGGGCCGCCGCCTAGGTCGTGCGGAGGCCCCCAGGCACCGCTGCCCGGCCCGGTCTCCTGCCACCGCACCACCCGCAGCCCCAGCACGGCATAGGCCGCGAGCCTGCCGTCCGGCTCGGCGGTGAGGACCGTGCGCGTGCCCGGGTAGCGGTGGTGGGTGGAGCGGACCCAGCCCTTGCGGTTGGTGAGCGGGCGGTCGCCGCCGACGTTGTAGTCACCGCAGCCGGACGGATTGCCGCAGTCCCAGTCGGGCGAGCCCCCGTAGGGGACGAGGTGGGCGGCCTTCCTCGCCAGTACCCCCTGCGGCAGGTTCTTCGGCCAGTGCCGGTTGTAGTAACCGCGGTAGGCGACCGTGACGAAGCCCGGTATCCGGCCACCGTCCGCGGTCGCCCGGGCCACCCAGCGGATCATCGCGGCCCACGCGAAGCAGGCCGCGGCCGTGTGGTCGGCGTGGTCGGAGTAGCCGGGCTGTTCGCTGTCCCTGCGGCGGACGGCCTCCGTGCTGTGCTGGATGTCCGGGTCGGGGTCCAGGGTGTGGACGACGGTGGGCCGGTAGCTCTCCATCAGGCCGGTGAGGACCCCGACCAGCCCGTCGTACGTGTACGAGCCGGCGCGCCGCAGCGGCGATCCGTCGGCCACGACCGTACGCAGCACGAGCCGGCGATCCTGCCAGAGACTGGGCAGCCCGAGCCGGTGCCGGCCGGTGTGCATGGCCGTGTTGAGGAAGATCAACTCCACTCTGCGGCCGTCGGCCGCCAGCACGTTCACCTCGGCCCTGTGGTCCGGGCCGAGCTCGGCGACGGAGACCTCCCAGGGGGTGAAGGGCCGCAGCCCGAGCAGGGCG\n' 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| diff -r 12870a79d56b -r 9d689f8c9ce4 test-data/Regex_Find_And_Replace_on_data_21.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Regex_Find_And_Replace_on_data_21.fasta Thu Aug 08 11:58:48 2024 +0000 |
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| @@ -0,0 +1,119 @@ +>BGC0001472_1 # 312 # 683 # 1 # ID=1_1;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.642 +MPTIQQLVRKGRQDKVEKNKTPALEGSPQRRGVCTRVFTTTPKKPNSALRKVARVRLTSG +IEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYGAK +KEK +>BGC0001472_2 # 686 # 1156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.660 +MPRKGPAPKRPVIIDPVYSSPLVTSLINKILLDGKRSTAERIVYGAMEGLREKTGADPVI +TLKRALENVKPSLEVKSRRVGGATYQVPIEVKPGRAATLALRWVVGYSRARREKTMTERL +MNELLDASNGLGAAVKKREDTHKMAESNKAFAHYRW +>BGC0001472_3 # 1195 # 3324 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.652 +MATTSLDLAKVRNIGIMAHIDAGKTTTTERILFYTGVSYKIGEVHDGAATMDWMEQEQER +GITITSAATTCHWPLNDVDHTINIIDTPGHVDFTVEVERSLRVLDGAVTVFDGVAGVEPQ +SETVWRQADRYGVPRICFVNKLDRTGADFLRCVDMIVQRLGAVPIVMQLPIGAEADFRGV +VDLVSMKAFVYPEEAVKGEMYDTVEIPDNLKEAAEEWRGKLLEAVSENDDQMMELYLEGE +EPTEEQLHEAIRRITLASKGSADSVTVTPVFCGTAFKNKGVQPLLDAVVRYLPSPLDVEA +IEGHDVKDPEKVVQRKPSDDEPFSGLAFKIASDPHLGKLTFVRIYSGRLEAGTAVLNSVK +GKKERIGKIYRMHANKREEIPSVGAGDIVAVMGLKQTTTGETLCDDKNPVILESMDFPAP +VIQVAIEPKSKGDQEKLGVAIQRLSEEDPSFQVHSDEETGQTIIGGMGELHLEVLVDRMK +REFRVEANVGKPQVAYRETIRKAVERIDYTHKKQTGGTGQFAKVQIAIEPIEGGDASYEF +VNKVTGGRIPREYIPSVDAGAQEAMQFGILAGYEMVGVRVTLLDGGYHEVDSSELAFKIA +GSQAFKEGARKASPVLLEPMMAVEVTTPEDYMGEVVGDINSRRGQIQAMEERHGARVVKG +LVPLSEMFGYVGDLRSKTSGRASYSMQFDSYAEVPRNVAEEIIAKAKGE +>BGC0001472_4 # 3472 # 4665 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 +MAKAKFERTKPHVNIGTIGHIDHGKTTLTAAITKVLHDAYPDLNEASAFDQIDKAPEERQ +RGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTKE +HVLLARQVGVPYIVVALNKADMVDDEEILELVELEVRELLSEYEFPGDDLPVVKVSALKA +LEGDAEWGQTVLDLMKAVDESIPQPERDVEKPFLMPIEDVFTITGRGTVVTGRIERGVLK +VNETVDIVGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQVIIKPG +SVTPHTEFQAQAYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDNT +LMDVALIQPVAMEEGLKFAIREGGRTVGAGQVTKITK +>BGC0001472_5 # 4869 # 5570 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.712 +MRNDVTSMTAVLEGFTSRTPTSDGLAAERRPVPFADSVPVEPQPSAEDLRPVHDLRGTLE +RRRSSLHYAPLPVRTDVILSLLRDVLRRDRDDWGLDASAGALEGFVFAFRSEGAEPGLYR +VTAEETCYLAGLDEIGPAENLGVQREFSTGAGIVALYASLDRADTWAGSHGYRISALRAS +MATYDLNLRCQALGLVGTLFGGFVPSSVHHLVHSDGATRHSLLATTYARPPES +>BGC0001472_6 # 5567 # 7195 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.709 +MVAEMKAEQIGRAARTDMQLTVPARPVLRRGVRLRRAGESVVLDGADRAQVFSGAFAREG +LVPLTEACDGTRDHTELALKTGFDEATVYKCLALLSTAGAVEEAMSGEEPDVTPEWAVFL +SRLGNSTGSNPSWADAAARLVSRSVRLEGDAALVAGARRSLREVCPVVTEPAGPPGPGDE +LTVFFETPASAPLLAATEERCRQDGRPLLRVRADARTITIGPYADLSITPCLDCGRHGEA +DLSGEPPEYLHDLVVGLASHHVTALLARATISHLPGDFTVIDTATLSTVYRPVAVRPGCP +RCSYARGPVAPQAPAGAVYEASVAMPPRAFLAPKDHQAHYYASNLRLQSQFKDWPSRPHT +PLPALDISVLAGSERHDPSHGDTPLTLSSLGLLLKVAFGVKEDETTPERVKRWTAASGNI +GSTTAYAVVRDDRIMPPGVYAYAQGSHTLVTVSGEVPPGDSPCDIIITGDLKKVMTKYGT +FGFRLVFLDAGCNLASLRELAQHLGLGFTPRSDWDDDALARLLGTSPADEPVAAFASLGG +TA +>BGC0001472_7 # 7210 # 7821 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.712 +MSHDPRPQCLYLVGDTFSRRLTEHRGVPPELQVSFEDFLNDTAPHADVVVPVHAGGDPGL +RDETDRICAERSTPSVGLQLLPTKVLCGPVVVPGRTACYACYRKRAAQHAGTARPYDMDA +ALSGLPEGFGRQHLSVASGLLDLALTEIATGVTGIGGTVRTFNLVSGAVSSAVTVSVNRC +PRCGGRFSQARADSAMPVPELLR +>BGC0001472_8 # 7845 # 9191 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.709 +MHLNRPQEHISAELRGLEELVSPYGLVSRTAPLPVREGEPPFAVQLAYLGVPSRALPNLR +TWAHDEDTGNSDGAGTGLTPERAKLVSIAEALERYSTCAWDDDEMVVAAENDLTEEFVSP +SRWPSCSPTELARDDCSLSAYDPSVPIRWVRAWSLTRRIPVLVPAISVYLHMPYQSKSEE +FIRGITTGAAVHSDVRSAVLGGLLEVVERDAIALVWLQQLRLPELVVDPARLDAGVRELH +RVGTSTDLRVRLFDATTDFGVPVIYAVQLSDADPALAQIVAATCDVHPEQALGKIYRELA +SLRVALRGYLSAYAGREPDPAKVSVVGGAVHNATRDRRDVFGFLLDGERPAYGLEGMPGL +PAGADPLDTVVARLAARGAEVLVTDITTDEARQVGMRAVKVLVPEAMPVSFVHGERYLGT +PRLYDAPRAMGHTSHAEDAVNPVQQPFA +>BGC0001472_9 # 9238 # 10437 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.621 +MTQITLEPGFLLLISLSYGRLQDHVTARLAPAEISGVSFVHLFATIPQPVGSKYNDTFAP +LIRELFAPERVGGAGGHGPYYFVRTQDAQLGTDTLQISIEGVSDEDSTRADLHRTAERYG +CAAQVDATPLDSVPSPLWNAGFTGTGFSASSKRLFQEAAPTLVSFLNRAAETPQSPPPAL +GAIRLMAAHTRATLLRSPQREIDGYEFRELLSLRLLSYRSHFEAIYLRTKDPQSFDAACA +RFYEQVGAGVREFITACGDPDDDPADEMVRLWTKSITSESSHLAENFSDGSVVNAGHTLE +DLVRKRGAPVEPTRFHTPPSPELDRLMHRDADFLAFRLQTSLLYSCLYTLGFSLAERYVF +CYVVARANEDVCGKSMKELQDELDGLARSMASGSTKTAE +>BGC0001472_10 # 10511 # 10654 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.590 +MEQQIELDVLEISDLIAGAGENDDLAQVMAASCTTTSVSTSSSSSSS +>BGC0001472_11 # 10977 # 13634 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.701 +MGVNISPYVVYRRSRLPLGELGGMSFTTAWSRIDELHALRDEIGKNAVGLADRLGELVPT +LGDDVRADLIRLRRDVHNLRHDRAVARLEPLRPHLGREVVDEVETWCALGVRAEQCERAG +REELESEKARAADGFGALFEHDAMARSIQLSGDRLYRGLRDLVAGDEASALKPSKARLRE +SSLVNFAYRASLKPSPFGRFTEIGAFPPDDPRPADPGGRHGGTQESVTTLNRLLVNWGPP +GLPLVPGGMEPGHLVLNSTLRAGTEYVEYVGVAPGSREDGRMATERVLRVRREGLFDALL +AAMPEGSAPAATVLRDLTAVTGKAETSRKVVQGLIRAGILFFRPEIDDHDPDYSMKLDRV +LAAGGTPETAALRGHFSELRRLETDFSEAAADERQKLLDSAYAAIGGIAELCKVSPPPEE +VLKSPVFEDTPASTAPQAWNLPTVEGSIPALTGLWRLASMMDNGQVKRLGLYSFATRVLG +DRSTMPFLEFFQAFSSLTDQEQVDVFMGRDVEEAERYTRQRAEALRTIRQRLVPGDGTVH +LDPSVIEKACEGVEDLLDTESVTFRAQFAQGVLPDRDRTLVVNGLLTGYGVYFSRFGSFV +EGTDEWSLPAAQREHLARRFPGQVDLNSVLGFNFNLHPSVTRRVVNYPGAVSLGAERTVY +GLARLEVRADQATRSLRLWDPEAQETLDLVPMNFMTPIGVPLLYRLLEALSPSNRYLWKP +LDDIRDAGGPTVYGETAPRLVVGDVVADRRSWNVAAAEIPMLQDLSRDVPEALVAFDAWR +LTRGLPRHAFVLCQTPEERDVMAGRSRKVTRQWADYAHLRRASVHKPMYVDFRNPFLVRS +FAKSALSRGDVVASIRECLPSVDDYGPDTGWTAAEEFFVELCTDN +>BGC0001472_12 # 13612 # 14571 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.706 +MNCVPTTSGQTGTREWRTVHIHVPHSLHTPFLCDVVEPLLRSEGLQDHFFFLRYWQGGPH +LRLRMLCGPGAGSAEAAERVVAGLARAMPEFGAQAREEYALGLTLQDELARLEKETSEEG +RPIGALDRVAYEPEYRKYGGTEGLQIAETVFRKSSVAVLGLLGGQPRAWVDERRAPIGEA +ARIMAMFLHGAGLDPRAAGLFLREYEDWWRTYAPDDMQRAWPKLFGGVSAQMTNLCAAVW +RDGATDVFHDISAEAAARARSVCGAEPGGDVRDLRLDGTPYPGCLSNYVHTTNNRLGLVP +AAEGLVAYLVRRGLEAMDG +>BGC0001472_13 # 14692 # 15894 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.685 +MTDRQDSAYPYPRTCPLHPPKEYASLRAEQPITKVTLASGRTAWLLTRHEHIRQLLADPH +VSSNLAHPGYPLHFDAPPEVMEQMRPVLLAMDPPVHTAQRKMVIPEFTVKRVLQLRPRVE +EIVDECISSMLAGEGPADLVEALALPVPSLVICELLGVPRSDRAFFQDRTNKLVSVDADP +QERNSAHQELHAYFSELVTAQEADPGDDLLGRLVVKNRETGTFDHGELVGMANVLLVGGH +ETTANMISLGVVGLLENPDQLAKLRADPGLAPQAVDELLRYFSIADQVTSRVATADLEIG +GVLIRAGEGVIGLSASGNHDEAVFPDPDRLDIERGGRHHLAFGHGIHQCIGQNLAKLELE +VVFNALLARIPGLKLATPVAELPFKDSMGVYGLHKLPVSW +>BGC0001472_14 # 16220 # 16564 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.626 +MYLSIVMWDLKKSEATVESLREYLRDYAVDAYSALDGMRLKAWFSDSARQLWGAVYLWDS +PEQMPGLYKVSRVIDLIGYPPTSVGGFTLEATAEGKSVHETLAGLGIALEGGTQ +>BGC0001472_15 # 17019 # 17729 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.636 +MLIEDIEPLLQSIRAGVEFIEIYGLDTVPVPDSLLAECERRRIPVRLLAASVANQVFKTE +KKPKVFGIAKVPRPRRLSDLSDMTGDLILLDGVKIVGNIGAIVRTSFALGASGIVLVDSD +LGSIADRRLIRASRGYVFSLPIVLASRAEALQYFQDNAMRPVVFEADGDLGVADLDGMDE +RLVLMFGSERIGPSGEFSDIAAKSVSIPMNPAAESLNVSVSAGIALHARARRNLSR +>BGC0001472_16 # 17815 # 19485 # -1 # ID=1_16;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.756 +ALLGLRPFTPWEVSVAELGPDHRAEVNVLAADGRRVELIFLNTAMHTGRHRLGLPSLWQD +RRLVLRTVVADGSPLRRAGSYTYDGLVGVLTGLMESYRPTVVHTLDPDPDIQHSTEAVRR +RDSEQPGYSDHADHTAAACFAWAAMIRWVARATADGGRIPGFVTVAYRGYYNRHWPKNLP +QGVLARKAAHLVPYGGSPDWDCGNPSGCGDYNVGGDRPLTNRKGWVRSTHHRYPGTRTVL +TAEPDGRLAAYAVLGLRVVRWQETGPGSGAWGPPHDLGGGPLAPALGSATTRDGRLLLFG +LRFAALGGHGADNEREIVVLEQSAPGRGFRPWRGLGSPSPGRDEVRRTGVPVAVAAPDGQ +IHLFVRDAEKGVSTRVRDGAGRWSAWRDMGGGEVQDGLHTAVDEGGRVHVFGAGHHAVHH +WTQDTPSAGLTARTQLTAAPVPAHAPAALPAPDGSVSLYYRAAAGSGLTTARAGTAVPGA +RFDGYXXVDAAPSPRGPVLLGRTAEGLVQLLMGGGLHVRTDGPAALDGASLRLGPDGRPS +VAGLGPDAAPWMWRPR |
| b |
| diff -r 12870a79d56b -r 9d689f8c9ce4 test-data/Sanntis_output_data.genbank --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Sanntis_output_data.genbank Thu Aug 08 11:58:48 2024 +0000 |
| b |
| b'@@ -0,0 +1,479 @@\n+LOCUS BGC0001472 19486 bp DNA UNK 01-JAN-1980\n+DEFINITION BGC0001472.\n+ACCESSION BGC0001472\n+VERSION BGC0001472\n+KEYWORDS .\n+SOURCE .\n+ ORGANISM .\n+ .\n+FEATURES Location/Qualifiers\n+ CDS 312..683\n+ /translation="MPTIQQLVRKGRQDKVEKNKTPALEGSPQRRGVCTRVFTTTPKKP\n+ NSALRKVARVRLTSGIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDT\n+ QGVKNRKQARSRYGAKKEK"\n+ /protein_id="BGC0001472_1"\n+ CDS 686..1156\n+ /translation="MPRKGPAPKRPVIIDPVYSSPLVTSLINKILLDGKRSTAERIVYG\n+ AMEGLREKTGADPVITLKRALENVKPSLEVKSRRVGGATYQVPIEVKPGRAATLALRWV\n+ VGYSRARREKTMTERLMNELLDASNGLGAAVKKREDTHKMAESNKAFAHYRW"\n+ /protein_id="BGC0001472_2"\n+ CDS 1195..3324\n+ /translation="MATTSLDLAKVRNIGIMAHIDAGKTTTTERILFYTGVSYKIGEVH\n+ DGAATMDWMEQEQERGITITSAATTCHWPLNDVDHTINIIDTPGHVDFTVEVERSLRVL\n+ DGAVTVFDGVAGVEPQSETVWRQADRYGVPRICFVNKLDRTGADFLRCVDMIVQRLGAV\n+ PIVMQLPIGAEADFRGVVDLVSMKAFVYPEEAVKGEMYDTVEIPDNLKEAAEEWRGKLL\n+ EAVSENDDQMMELYLEGEEPTEEQLHEAIRRITLASKGSADSVTVTPVFCGTAFKNKGV\n+ QPLLDAVVRYLPSPLDVEAIEGHDVKDPEKVVQRKPSDDEPFSGLAFKIASDPHLGKLT\n+ FVRIYSGRLEAGTAVLNSVKGKKERIGKIYRMHANKREEIPSVGAGDIVAVMGLKQTTT\n+ GETLCDDKNPVILESMDFPAPVIQVAIEPKSKGDQEKLGVAIQRLSEEDPSFQVHSDEE\n+ TGQTIIGGMGELHLEVLVDRMKREFRVEANVGKPQVAYRETIRKAVERIDYTHKKQTGG\n+ TGQFAKVQIAIEPIEGGDASYEFVNKVTGGRIPREYIPSVDAGAQEAMQFGILAGYEMV\n+ GVRVTLLDGGYHEVDSSELAFKIAGSQAFKEGARKASPVLLEPMMAVEVTTPEDYMGEV\n+ VGDINSRRGQIQAMEERHGARVVKGLVPLSEMFGYVGDLRSKTSGRASYSMQFDSYAEV\n+ PRNVAEEIIAKAKGE"\n+ /protein_id="BGC0001472_3"\n+ CDS 3472..4665\n+ /translation="MAKAKFERTKPHVNIGTIGHIDHGKTTLTAAITKVLHDAYPDLNE\n+ ASAFDQIDKAPEERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGA\n+ ILVVAATDGPMPQTKEHVLLARQVGVPYIVVALNKADMVDDEEILELVELEVRELLSEY\n+ EFPGDDLPVVKVSALKALEGDAEWGQTVLDLMKAVDESIPQPERDVEKPFLMPIEDVFT\n+ ITGRGTVVTGRIERGVLKVNETVDIVGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLL\n+ LRGIKREDVERGQVIIKPGSVTPHTEFQAQAYILSKDEGGRHTPFFNNYRPQFYFRTTD\n+ VTGVVTLPEGTEMVMPGDNTLMDVALIQPVAMEEGLKFAIREGGRTVGAGQVTKITK"\n+ /protein_id="BGC0001472_4"\n+ CDS 4869..5570\n+ /translation="MRNDVTSMTAVLEGFTSRTPTSDGLAAERRPVPFADSVPVEPQPS\n+ AEDLRPVHDLRGTLERRRSSLHYAPLPVRTDVILSLLRDVLRRDRDDWGLDASAGALEG\n+ FVFAFRSEGAEPGLYRVTAEETCYLAGLDEIGPAENLGVQREFSTGAGIVALYASLDRA\n+ DTWAGSHGYRISALRASMATYDLNLRCQALGLVGTLFGGFVPSSVHHLVHSDGATRHSL\n+ LATTYARPPES"\n+ /protein_id="BGC0001472_5"\n+ CDS 5567..7195\n+ /translation="MVAEMKAEQIGRAARTDMQLTVPARPVLRRGVRLRRAGESVVLDG\n+ ADRAQVFSGAFAREGLVPLTEACDGTRDHTELALKTGFDEATVYKCLALLSTAGAVEEA\n+ MSGEEPDVTPEWAVFLSRLGNSTGSNPSWADAAARLVSRSVRLEGDAALVAGARRSLRE\n+ VCPVVTEPAGPPGPGDELTVFFETPASAPLLAATEERCRQDGRPLLRVRADARTITIGP\n+ YADLSITPCLDCGRHGEADLSGEPPEYLHDLVVGLASHHVTALLARATISHLPGDFTVI\n+ DTATLSTVYRPVAVRPGCPRCSYARGPVAPQAPAGAVYEASVAMPPRAFLAPKDHQAHY\n+ YASNLRLQSQFKDWPSRPHTPLPALDISVLAGSERHDPSHGDTPLTLSSLGLLLKVAFG\n+ VKEDETTPERVKRWTAASGNIGSTTAYAVVRDDRIMPPGVYAYAQGSHTLVTVSGEVPP\n+ GDSPCDIIITGDLKKVMTKYGTFGFRLVFLDAGCNLASLRELAQHLGLGFTPRSDWDDD\n+ ALARLLGTSPADEPVAAFASLGGTA"\n+ /protein_id="BGC0001472_6"\n+ CDS 7210..7821\n+ '..b'ggtgc\n+ 16381 ggtctatctg tgggacagcc ccgagcagat gcccggcctg tacaaagtca gccgcgtgat\n+ 16441 cgatctcatc gggtatccgc cgacttcggt cggtggtttc acgctcgagg cgaccgccga\n+ 16501 agggaagagc gttcacgaga cactggccgg cctggggatc gccctggagg gcggaacgca\n+ 16561 gtaagggcag gcgtgcgacc ggatgggcgg gaggtttgcc gggccggtcg gttcgagggg\n+ 16621 cggtcgaggg ccggagccgc gcgggtggct tcgccgctcc ggctggcggc cgggtgtgga\n+ 16681 gtgccgcgcg gcgccggtgt cgcccgcgcc gggcatcacc gtgctcgcgg agggttcagg\n+ 16741 tgtgtcggac cggcgctttc gcgtgtgttc ggcaccgtcc ggtgggccgg gtgctgtgcg\n+ 16801 cgggcctcga gctcccgggc gggcgcggtg cgcaggccct ccccgcccgg acacgcgtat\n+ 16861 tccgcaccgc ttcacgaaga tcattcggtg aaggaggcgg gggcgctcgt gctaacgtcg\n+ 16921 tgatcgtggc cagccttgac attattaccg aacgctctga ttctgccgta caacgcatca\n+ 16981 tcgatgtgac aaagcattcg aggtccgttg tccgcacggt gctgatcgag gacatcgagc\n+ 17041 ctcttctgca gagcatccgt gccggagtgg aattcatcga gatctacgga ctcgacaccg\n+ 17101 tgcctgttcc ggacagtctg ctcgccgaat gtgaacggcg cagaattccg gtccggctgc\n+ 17161 tcgccgcttc ggtcgccaat caggtcttca agaccgagaa gaagcccaag gtattcggta\n+ 17221 tcgccaaggt cccgcggcct cgtcgcctgt cggacctgtc cgacatgacc ggtgacctca\n+ 17281 tcctgctcga cggagtgaag atcgtcggca atatcggagc catcgtgcgg acctcgttcg\n+ 17341 cgctcggggc ctcgggaatc gtgctcgtgg acagcgatct cggcagtatt gcggaccgcc\n+ 17401 gtctgatcag ggcgagccgg ggctatgtgt tctcccttcc catcgttctc gcgtcccggg\n+ 17461 ccgaggcgct ccagtacttc caggacaatg cgatgcgccc ggtggtgttc gaggccgacg\n+ 17521 gggatctcgg cgtcgctgat ctcgacggta tggacgagcg acttgtgctc atgttcggca\n+ 17581 gcgagaggat cggcccgtcg ggcgagttct ccgacatcgc cgccaagtcg gtctccattc\n+ 17641 cgatgaatcc cgcggccgag tccctcaacg tatcggtgtc ggccggaatc gcgctgcacg\n+ 17701 cgagggcccg ccgtaacctc tcccggtagt cccggccgca gagccccgtc aagggccccg\n+ 17761 tccctcccct ccgggagggg cggggccctt gacgtgcgcc gccgggagcc ctcgctaccg\n+ 17821 cggccgccac atccagggcg ccgcgtccgg acccaggccg gcgaccgaag gccggccgtc\n+ 17881 cgggcccagg cggagcgagg ccccgtccag ggcggccggc ccgtcggtcc gcacgtggag\n+ 17941 cccgccgccc atgagcagct ggacgaggcc ctcggcggtg cggcccagca gcacgggccc\n+ 18001 ccgcggcgac ggggcggcgt ccaccgnncc gtacccgtcg aaccgtgctc cgggcacggc\n+ 18061 cgtccccgcc cgagccgtgg tcagcccgct cccggccgct gcccggtagt agagggacac\n+ 18121 ggacccgtcg ggagccggga gggcggccgg cgcgtgggcc gggacgggcg ccgccgtgag\n+ 18181 ctgtgtgcga gccgtgagcc cggcggacgg ggtgtcctgg gtccagtggt gtacggcgtg\n+ 18241 gtggccggcg ccgaagacgt ggacgcgtcc accctcgtcc acggcggtgt gcaggccgtc\n+ 18301 ctgcacctct ccgccgccca tgtcccgcca cgcgctccac cgccccgccc cgtcccgcac\n+ 18361 ccgggtgctg acgcccttct cggcgtcgcg tacgaagaga tggatctgcc cgtccggagc\n+ 18421 ggcgacggcc accggtacgc ccgtgcgacg tacttcgtca cgtccgggag aaggagagcc\n+ 18481 caggccgcgc caggggcgga agccccggcc cggggcgctc tgctccagca ccacgatctc\n+ 18541 gcgctcgttg tcggcgccgt gcccgccgag tgcggcgaag cggagcccga acagcagcag\n+ 18601 gcgcccgtcc cgtgtggtgg ccgagcccag tgcgggggcg agcgggccgc cgcctaggtc\n+ 18661 gtgcggaggc ccccaggcac cgctgcccgg cccggtctcc tgccaccgca ccacccgcag\n+ 18721 ccccagcacg gcataggccg cgagcctgcc gtccggctcg gcggtgagga ccgtgcgcgt\n+ 18781 gcccgggtag cggtggtggg tggagcggac ccagcccttg cggttggtga gcgggcggtc\n+ 18841 gccgccgacg ttgtagtcac cgcagccgga cggattgccg cagtcccagt cgggcgagcc\n+ 18901 cccgtagggg acgaggtggg cggccttcct cgccagtacc ccctgcggca ggttcttcgg\n+ 18961 ccagtgccgg ttgtagtaac cgcggtaggc gaccgtgacg aagcccggta tccggccacc\n+ 19021 gtccgcggtc gcccgggcca cccagcggat catcgcggcc cacgcgaagc aggccgcggc\n+ 19081 cgtgtggtcg gcgtggtcgg agtagccggg ctgttcgctg tccctgcggc ggacggcctc\n+ 19141 cgtgctgtgc tggatgtccg ggtcggggtc cagggtgtgg acgacggtgg gccggtagct\n+ 19201 ctccatcagg ccggtgagga ccccgaccag cccgtcgtac gtgtacgagc cggcgcgccg\n+ 19261 cagcggcgat ccgtcggcca cgaccgtacg cagcacgagc cggcgatcct gccagagact\n+ 19321 gggcagcccg agccggtgcc ggccggtgtg catggccgtg ttgaggaaga tcaactccac\n+ 19381 tctgcggccg tcggccgcca gcacgttcac ctcggccctg tggtccgggc cgagctcggc\n+ 19441 gacggagacc tcccaggggg tgaagggccg cagcccgagc agggcg\n+//\n' |