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Commit message:
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit af2ada375a150ebcdc8667390c78396149c807d7 |
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added:
show_metadata.xml test-data/test1.metadata_report test-data/test1.tabular |
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| diff -r 000000000000 -r 9d9223704c63 show_metadata.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/show_metadata.xml Fri Oct 16 05:26:45 2015 -0400 |
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| @@ -0,0 +1,26 @@ +<tool id="show_metadata" name="Show Metadata" version="1.0.0"> + <description>Debugging utility: show all metadata of a history item</description> + <command><![CDATA[ + #for $metadata_element, $metadata_value in $input.metadata.items() + echo "$metadata_element: $metadata_value" >> $output ; + #end for + ]]></command> + <inputs> + <param name="input" type="data" label="File to scan for all metadata" /> + </inputs> + <outputs> + <data format="txt" name="output" label="${tool.name} on ${input.name}" /> + </outputs> + <tests> + <test> + <param name="input" value="test1.tabular" ftype="tabular" dbkey="hg19" /> + <output name="output" file="test1.metadata_report"/> + </test> + </tests> + + <help><![CDATA[ + ** What it does? ** + + Shows all the metadata elements of a history item. + ]]></help> +</tool> |
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| diff -r 000000000000 -r 9d9223704c63 test-data/test1.metadata_report --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test1.metadata_report Fri Oct 16 05:26:45 2015 -0400 |
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| @@ -0,0 +1,7 @@ +dbkey: hg19 +data_lines: 4 +comment_lines: 3 +columns: 3 +column_types: str,str,str +column_names: __ob____cb__ +delimiter: __tc__ |
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| diff -r 000000000000 -r 9d9223704c63 test-data/test1.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test1.tabular Fri Oct 16 05:26:45 2015 -0400 |
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| @@ -0,0 +1,7 @@ +#header1 +#header2 +#header3 +c1 c2 c3 +a 2 4 +b 1 4 +c 4 3 |