| Previous changeset 6:8b42de6ad28a (2018-10-30) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c" |
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modified:
filter_otus_from_otu_table.xml macros.xml |
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| diff -r 8b42de6ad28a -r 9db0d2cf4451 filter_otus_from_otu_table.xml --- a/filter_otus_from_otu_table.xml Tue Oct 30 19:57:18 2018 -0400 +++ b/filter_otus_from_otu_table.xml Thu Dec 05 07:50:35 2019 -0500 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="qiime_filter_otus_from_otu_table" name="Filter OTUs from an OTU table" version="@WRAPPER_VERSION@.0"> +<tool id="qiime_filter_otus_from_otu_table" name="Filter OTUs from an OTU table" version="@WRAPPER_VERSION@.0" profile="@PROFILE@"> <description> based on their observation counts or identifier (filter_otus_from_otu_table)</description> <macros> <import>macros.xml</import> @@ -6,6 +6,7 @@ <expand macro="requirements"/> <version_command>filter_otus_from_otu_table.py --version</version_command> <command detect_errors="aggressive"><![CDATA[ +@MPLBACKEND@ filter_otus_from_otu_table.py --input_fp '$input_fp' --output_fp '$output_fp' @@ -65,7 +66,7 @@ <conditional name="id_filtering_condition"> <param name="id_filtering_switch" value="no"/> </conditional> - <output name="output_fp" file="filter_otus_from_otu_table/filtered_otu_table.biom" ftype="biom1" compare="sim_size" delta="0" /> + <output name="output_fp" file="filter_otus_from_otu_table/filtered_otu_table.biom" ftype="biom1" compare="sim_size" delta="200" /> </test> <test> <param name="input_fp" value="filter_otus_from_otu_table/otu_table.biom" /> @@ -74,7 +75,7 @@ <param name="otu_ids_to_exclude_fp" value="filter_otus_from_otu_table/chimeric_otus.txt"/> <param name="negate_ids_to_exclude" value="False"/> </conditional> - <output name="output_fp" file="filter_otus_from_otu_table/chimera_filtered_otu_table.biom" ftype="biom1" compare="sim_size" delta="0" /> + <output name="output_fp" file="filter_otus_from_otu_table/chimera_filtered_otu_table.biom" ftype="biom1" compare="sim_size" delta="200" /> </test> <test> <param name="input_fp" value="filter_otus_from_otu_table/otu_table.biom" /> @@ -83,7 +84,7 @@ <param name="otu_ids_to_exclude_fp" value="filter_otus_from_otu_table/chimeric_otus.txt"/> <param name="negate_ids_to_exclude" value="True"/> </conditional> - <output name="output_fp" file="filter_otus_from_otu_table/chimera_picked_otu_table.biom" ftype="biom1" compare="sim_size" delta="0" /> + <output name="output_fp" file="filter_otus_from_otu_table/chimera_picked_otu_table.biom" ftype="biom1" compare="sim_size" delta="200" /> </test> </tests> <help><![CDATA[ |
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| diff -r 8b42de6ad28a -r 9db0d2cf4451 macros.xml --- a/macros.xml Tue Oct 30 19:57:18 2018 -0400 +++ b/macros.xml Thu Dec 05 07:50:35 2019 -0500 |
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| @@ -1,6 +1,8 @@ <?xml version="1.0" ?> <macros> + <token name="@PROFILE@">18.01</token> <token name="@WRAPPER_VERSION@">1.9.1</token> + <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND=Agg && echo "backend:agg" > matplotlibrc &&]]></token> <xml name="requirements"> <requirements> <requirement type="package" version="@WRAPPER_VERSION@">qiime</requirement> |