| Previous changeset 3:5ec0f8b1a609 (2024-03-05) Next changeset 5:596fa7bf596f (2024-03-07) |
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Commit message:
planemo upload for repository https://gitlab.pasteur.fr/galaxy-team/galaxy-tools/-/tree/master/tools/defense-finder commit 233507b0aee1ffa05cc217fe5f7de704c505d2fa |
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modified:
defense_finder.xml macros.xml |
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| diff -r 5ec0f8b1a609 -r 9dbeaec173b5 defense_finder.xml --- a/defense_finder.xml Tue Mar 05 13:16:41 2024 +0000 +++ b/defense_finder.xml Thu Mar 07 15:57:42 2024 +0000 |
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| @@ -1,17 +1,18 @@ <tool id="defense_finder" name="DefenseFinder" version="@TOOL_VERSION@+@WRAPPER_VERSION@" python_template_version="3.5" profile="21.05"> <description>systematically detect known anti-phage systems</description> <macros> - <token name="@WRAPPER_VERSION@">galaxy2</token> + <token name="@WRAPPER_VERSION@">galaxy0</token> <import>macros.xml</import> </macros> <expand macro="edam_ontology"/> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ - mkdir models && - ln -s '${models.fields.path}' 'models/${models.fields.value}' && + mkdir tmp-models && + echo ${models.fields.path} && + ln -s '${models.fields.path}' 'tmp-models/${models.fields.value}' && ln -s '${genome}' '${genome.name}' && defense-finder run '${genome.name}' - --models-dir 'models/${models.fields.value}' + --models-dir 'tmp-models/${models.fields.value}' --workers \${GALAXY_SLOTS:-1} --db-type '${db_type}' --coverage '${coverage}' |
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| diff -r 5ec0f8b1a609 -r 9dbeaec173b5 macros.xml --- a/macros.xml Tue Mar 05 13:16:41 2024 +0000 +++ b/macros.xml Thu Mar 07 15:57:42 2024 +0000 |
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| @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">1.2.0</token> + <token name="@TOOL_VERSION@">1.2.2</token> <xml name="edam_ontology"> <edam_topics> <edam_topic>topic_0085</edam_topic> |