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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genehunter_modscore/ commit bf4a43ac2ae894eeeb6e608badb6ea7f8288c8d9 |
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added:
genehunter_modscore.xml test-data/datain_1.21 test-data/map_1.21 test-data/pedin_1.21 |
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| diff -r 000000000000 -r 9e6a43112688 genehunter_modscore.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/genehunter_modscore.xml Sat Dec 09 05:58:25 2017 -0500 |
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| b'@@ -0,0 +1,476 @@\n+<tool id="genehunter_modscore" name="Genehunter-Modscore" version="@VERSION@.0" >\n+ <description>Linkage and Haplotypes analysis</description>\n+ <macros>\n+ <token name="@VERSION@">3.0.0</token>\n+ <xml name="macro_npl_opts" >\n+ <param name="extra_npl_score" type="select" label="Type of NPL scoring">\n+ <option value="all" selected="true" >All</option>\n+ <option value="pairs" >Pairs</option>\n+ <option value="hom" >Homozygous</option>\n+ </param>\n+ </xml>\n+ <!-- Input test file collection -->\n+ <xml name="test_input_files">\n+ <param name="inp_ped" value="pedin_1.21" />\n+ <param name="inp_dat" value="datain_1.21" />\n+ <param name="inp_map" value="map_1.21" />\n+ </xml>\n+ <!-- End Input test file collection -->\n+ <!-- Output test file(s) -->\n+ <xml name="test_output_fparam">\n+ <output name="fparam" >\n+ <assert_contents>\n+ <has_text_matching expression="\\s*\\d+\\.\\d+\\s+-\\d+\\.\\d+(\\s+\\d+\\.\\d+){2}\\s+rs17000204$" />\n+ </assert_contents>\n+ </output>\n+ </xml>\n+ <xml name="test_output_haplo">\n+ <output name="ihaplo" >\n+ <assert_contents>\n+ <has_text_matching expression="1\\s+206006\\s+206001\\s+206002\\s+2\\s+2(\\s+[0-2])+" />\n+ </assert_contents>\n+ </output>\n+ </xml>\n+ <!-- End Output test file(s) -->\n+ </macros>\n+ <requirements>\n+ <requirement type="package" version="@VERSION@" >ghm</requirement>\n+ <requirement type="package" version="2017.3" >linkage2allegro</requirement>\n+ </requirements>\n+ <version_command><![CDATA[\n+ echo q | ghm | grep -oP "(?<=(\\(version\\ ))[^)]+"\n+ ]]>\n+ </version_command>\n+ <command detect_errors=\'exit_code\'><![CDATA[\n+ghm < \'$setup_file\'\n+\n+&& linkage2allegro\n+ \'${inp_ped}\'\n+ \'${inp_map}\'\n+ genehunter\n+ -l gh.out\n+#if $section_haplo.analysis_haplo.extra_haplotype\n+ -h haplo.dump\n+#end if\n+\n+&& mv linkage.allegro_lod \'${fparam}\'\n+#if $section_haplo.analysis_haplo.extra_haplotype\n+&& mv linkage.allegro_haplo \'${ihaplo}\'\n+#end if\n+ ]]>\n+ </command>\n+ <configfiles>\n+ <configfile name="setup_file" ><![CDATA[\n+photo gh.out\n+\n+ps off\n+\n+## Initiate mod score lod calculation and store IVs, off by default\n+modcalc ${section_options.section_pvalues.advanced_options_modcalc.extra_modcalc}\n+## global / single / off\n+\n+haplotype ${section_haplo.analysis_haplo.extra_haplotype}\n+## on / off, generate Haplotypes\n+\n+#if $section_haplo.analysis_haplo.extra_haplotype\n+haplotype method ${section_haplo.analysis_haplo.extra_haplotype_method}\n+## [MaxProb] / Viterbi\n+#end if\n+\n+analysis ${section_linkage.npl_scoring.extra_mod_analysis}\n+## NPL / LOD / BOTH, type of linkage analysis\n+\n+#if $section_linkage.npl_scoring.extra_mod_analysis.value != \'LOD\':\n+score ${section_linkage.npl_scoring.extra_npl_score}\n+## pairs / all / hom\n+#else\n+score all\n+#end if\n+\n+#if $section_linkage.extra_singlepoint\n+single point ${section_linkage.extra_singlepoint}\n+## on / off, dont use multi-point parametric\n+#end if\n+\n+## -- Re-enable in 3.1\n+## Algebraic calculation for P-values, default on\n+## #if $section_options.section_pvalues.advanced_options_alg.extra_alg\n+## alg ${section_options.section_pvalues.advanced_options_alg.extra_alg}\n+## Use more memory for algebraic calculations\n+## algebra ${section_options.section_pvalues.advanced_options_alg.extra_alg_mem}\n+## #end if\n+\n+## Add custom trait models\n+#if $section_options.section_pvalues.advanced_options_model.extra_mod_model\n+model ${section_options.section_pvalues.advanced_options_model.extra_mod_modeldisfreq} ${section_options.section_pvalues.advanced_options_model.extra_mod_modelpenet}\n+#end if\n+\n+## Range of markers positions instead of all range\n+#if $section_options.section_range.advan'..b'\n+ <!-- End of Frequency section:Works -->\n+\n+ <!-- Sample Individuals section -->\n+ <section name="section_sample" title="Sample Options" >\n+ <param name="extra_sun" type="boolean" truevalue="on" falsevalue="off" checked="false" label="Simulate untyped individuals" />\n+ <param name="extra_includeuntyped" type="boolean" truevalue="on" falsevalue="off" checked="true" label="Include untyped individuals" />\n+ <param name="extra_cpv_fin" type="boolean" truevalue="on" falsevalue="off" checked="true" label="Process fully homozygous (uninformative) genotypes" />\n+ <param name="extra_discard" type="boolean" truevalue="on" falsevalue="off" checked="false" label="Discard uninformative individuals" />\n+ <param name="extra_ufo" type="boolean" truevalue="on" falsevalue="off" checked="false" label="Use untyped founders" />\n+ </section>\n+ <!-- End of sample individuals -->\n+ </section>\n+ <!-- End of advanced options -->\n+ </inputs>\n+\n+ <outputs>\n+ <!-- All outputs convert to an Allegro format -->\n+ <data name="ihaplo" format="allegro_ihaplo" label="${tool.name} on ${on_string}: Haplotypes" />\n+ <data name="fparam" format="allegro_fparam" label="${tool.name} on ${on_string}: MPT Linkage" />\n+ </outputs>\n+\n+ <tests>\n+ <test><!-- Defaults with haplo -->\n+ <expand macro="test_input_files" />\n+\n+ <param name="extra_haplotype" value="on" />\n+\n+ <expand macro="test_output_fparam" />\n+ <expand macro="test_output_haplo" />\n+ </test>\n+ <test><!-- Haplotypes via Viterbi resolution -->\n+ <expand macro="test_input_files" />\n+\n+ <param name="extra_mod_analysis" value="BOTH" />\n+ <param name="extra_haplotype" value="on" />\n+ <param name="extra_haplotype_method" value="Viterbi" />\n+ <param name="extra_increment_sizepavu" value="10" />\n+\n+ <expand macro="test_output_haplo" />\n+ <expand macro="test_output_fparam" />\n+ </test>\n+ <test><!-- Parametric LOD with restricted scoring -->\n+ <expand macro="test_input_files" />\n+\n+ <param name="extra_mod_allfreq" value="on" />\n+ <param name="extra_mod_highallele" value="0.8" />\n+ <param name="extra_npl_score" value="hom" />\n+\n+ <expand macro="test_output_fparam" />\n+ </test>\n+ <test><!-- Haplo + Single IBS with computed founders -->\n+ <expand macro="test_input_files" />\n+\n+ <param name="extra_cpv_fin" value="on" />\n+ <param name="extra_modcalc" value="single" />\n+ <param name="extra_mod_bep" value="bep on" />\n+ <param name="extra_srs" value="10" />\n+\n+ <expand macro="test_output_fparam" />\n+ </test>\n+ </tests>\n+\n+ <help><![CDATA[\n+\n+**Genehunter-MODscore** calculates a *maximized LOD* (MOD) score over a set of genotypes for use in linkage and haplotype analysis.\n+\n+Haplotypes are generated using either this maximum probability approach, or via slower more conventional Viterbi crawling.\n+\n+Untyped founders can be simulated by reconstructing their haplotypes from offspring, and points of recombination can still be accurately determined in lieu of this.\n+\n+Due to the stochastic nature of the analysis, a random seed can be set by the user to produce reproducible results.\n+\n+Many more configurable options are outlined in the the official manual_.\n+\n+.. _manual: https://www.helmholtz-muenchen.de/fileadmin/GENEPI/downloads/ghm-3.0.pdf\n+\n+]]>\n+ </help>\n+ <citations>\n+ <citation type="doi">10.1159/000369065</citation>\n+ <citation type="doi">10.1002/gepi.20264</citation>\n+ <citation type="doi">10.1093/bioinformatics/btl539</citation>\n+ <citation type="doi">10.1186/1471-2156-6-S1-S162</citation>\n+ </citations>\n+</tool>\n' |
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| diff -r 000000000000 -r 9e6a43112688 test-data/datain_1.21 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/datain_1.21 Sat Dec 09 05:58:25 2017 -0500 |
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| b'@@ -0,0 +1,410 @@\n+201 0 0 5\n+ 0 0.0 0.0 0 \n+ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201\n+1 2 \t# TRAIT\n+ 0.9999 0.0001\n+ 1\n+ 0.000 0.000 1.000\n+3 2 \t# rs1296971\n+ 0.4583 0.5417\n+3 2 \t# rs468601\n+ 0.1356 0.8644\n+3 2 \t# rs2821973\n+ 0.4083 0.5917\n+3 2 \t# rs1929150\n+ 0.3559 0.6441\n+3 2 \t# rs2822124\n+ 0.4407 0.5593\n+3 2 \t# rs2775054\n+ 0.2583 0.7417\n+3 2 \t# rs7276618\n+ 0.4167 0.5833\n+3 2 \t# rs392812\n+ 0.1000 0.9000\n+3 2 \t# rs2822368\n+ 0.2833 0.7167\n+3 2 \t# rs6516610\n+ 0.3167 0.6833\n+3 2 \t# rs447455\n+ 0.2000 0.8000\n+3 2 \t# rs437521\n+ 0.1667 0.8333\n+3 2 \t# rs2822554\n+ 0.1417 0.8583\n+3 2 \t# rs2822572\n+ 0.1000 0.9000\n+3 2 \t# rs13050350\n+ 0.3167 0.6833\n+3 2 \t# rs2142236\n+ 0.0667 0.9333\n+3 2 \t# rs2822677\n+ 0.0508 0.9492\n+3 2 \t# rs2822696\n+ 0.0833 0.9167\n+3 2 \t# rs376635\n+ 0.4500 0.5500\n+3 2 \t# rs2822765\n+ 0.4333 0.5667\n+3 2 \t# rs2822780\n+ 0.1667 0.8333\n+3 2 \t# rs465340\n+ 0.4917 0.5083\n+3 2 \t# rs1888398\n+ 0.2250 0.7750\n+3 2 \t# rs458052\n+ 0.3333 0.6667\n+3 2 \t# rs2822907\n+ 0.3250 0.6750\n+3 2 \t# rs8129531\n+ 0.2333 0.7667\n+3 2 \t# rs12053660\n+ 0.1500 0.8500\n+3 2 \t# rs1883003\n+ 0.2750 0.7250\n+3 2 \t# rs2822974\n+ 0.4833 0.5167\n+3 2 \t# rs11088231\n+ 0.1667 0.8333\n+3 2 \t# rs2205239\n+ 0.4250 0.5750\n+3 2 \t# rs2823045\n+ 0.2417 0.7583\n+3 2 \t# rs926164\n+ 0.2750 0.7250\n+3 2 \t# rs2823139\n+ 0.2417 0.7583\n+3 2 \t# rs2823161\n+ 0.3667 0.6333\n+3 2 \t# rs2823194\n+ 0.0750 0.9250\n+3 2 \t# rs2049882\n+ 0.0917 0.9083\n+3 2 \t# rs1736148\n+ 0.4417 0.5583\n+3 2 \t# rs2823301\n+ 0.2583 0.7417\n+3 2 \t# rs6517467\n+ 0.2333 0.7667\n+3 2 \t# rs2064051\n+ 0.2333 0.7667\n+3 2 \t# rs9974915\n+ 0.1000 0.9000\n+3 2 \t# rs2823400\n+ 0.3583 0.6417\n+3 2 \t# rs726634\n+ 0.3167 0.6833\n+3 2 \t# rs7283707\n+ 0.1083 0.8917\n+3 2 \t# rs7283161\n+ 0.4333 0.5667\n+3 2 \t# rs9982633\n+ 0.2500 0.7500\n+3 2 \t# rs2823621\n+ 0.4333 0.5667\n+3 2 \t# rs2051347\n+ 0.3000 0.7000\n+3 2 \t# rs2823702\n+ 0.3417 0.6583\n+3 2 \t# rs189457\n+ 0.3167 0.6833\n+3 2 \t# rs2823748\n+ 0.3167 0.6833\n+3 2 \t# rs2849869\n+ 0.2417 0.7583\n+3 2 \t# rs1667568\n+ 0.0917 0.9083\n+3 2 \t# rs171267\n+ 0.4417 0.5583\n+3 2 \t# rs11911987\n+ 0.0333 0.9667\n+3 2 \t# rs2823881\n+ 0.0417 0.9583\n+3 2 \t# rs2823912\n+ 0.0917 0.9083\n+3 2 \t# rs2032287\n+ 0.3333 0.6667\n+3 2 \t# rs4818278\n+ 0.2667 0.7333\n+3 2 \t# rs11700643\n+ 0.2833 0.7167\n+3 2 \t# rs418989\n+ 0.1333 0.8667\n+3 2 \t# rs4818307\n+ 0.0583 0.9417\n+3 2 \t# rs11701390\n+ 0.3667 0.6333\n+3 2 \t# rs2824192\n+ 0.4825 0.5175\n+3 2 \t# rs2824231\n+ 0.4250 0.5750\n+3 2 \t# rs1501813\n+ 0.1917 0.8083\n+3 2 \t# rs2824273\n+ 0.3833 0.6167\n+3 2 \t# rs2824282\n+ 0.3500 0.6500\n+3 2 \t# rs4536738\n+ 0.3000 0.7000\n+3 2 \t# rs2824292\n+ 0.4917 0.5083\n+3 2 \t# rs208885\n+ 0.2250 0.7750\n+3 2 \t# rs2849886\n+ 0.1667 0.8333\n+3 2 \t# rs764657\n+ 0.3917 0.6083\n+3 2 \t# rs9977638\n+ 0.3417 0.6583\n+3 2 \t# rs2824435\n+ 0.2000 0.8000\n+3 2 \t# rs243570\n+ 0.2750 0.7250\n+3 2 \t# rs243587\n+ 0.4917 0.5083\n+3 2 \t# rs243619\n+ 0.4667 0.5333\n+3 2 \t# rs2824560\n+ 0.3333 0.6667\n+3 2 \t# rs200801\n+ 0.5000 0.5000\n+3 2 \t# rs157740\n+ 0.3750 0.6250\n+3 2 \t# rs2260211\n+ 0.1750 0.8250\n+3 2 \t# rs1491781\n+ 0.3750 0.6250\n+3 2 \t# rs2824646\n+ 0.2667 0.7333\n+3 2 \t# rs2824669\n+ 0.3333 0.6667\n+3 2 \t# rs2824688\n+ 0.1417 0.8583\n+3 2 \t# rs2824699\n+ 0.0583 0.9417\n+3 2 \t# rs2824704\n+ 0.3750 0.6250\n+3 2 \t# rs9983595\n+ 0.1750 0.8250\n+3 2 \t# rs7283555\n+ 0.1333 0.8667\n+3 2 \t# rs2824733\n+ 0.2250 0.'..b'\n+ 0.2250 0.7750\n+3 2 \t# rs2826844\n+ 0.1500 0.8500\n+3 2 \t# rs233803\n+ 0.0750 0.9250\n+3 2 \t# rs8134226\n+ 0.2500 0.7500\n+3 2 \t# rs1735990\n+ 0.4167 0.5833\n+3 2 \t# rs2826982\n+ 0.3417 0.6583\n+3 2 \t# rs2827045\n+ 0.1083 0.8917\n+3 2 \t# rs2827102\n+ 0.1167 0.8833\n+3 2 \t# rs2246589\n+ 0.2417 0.7583\n+3 2 \t# rs2154723\n+ 0.4667 0.5333\n+3 2 \t# rs2827203\n+ 0.3333 0.6667\n+3 2 \t# rs2827251\n+ 0.0833 0.9167\n+3 2 \t# rs2827308\n+ 0.4583 0.5417\n+3 2 \t# rs2827322\n+ 0.0917 0.9083\n+3 2 \t# rs2827338\n+ 0.3167 0.6833\n+3 2 \t# rs2014609\n+ 0.3000 0.7000\n+3 2 \t# rs2827606\n+ 0.2750 0.7250\n+3 2 \t# rs2827641\n+ 0.2500 0.7500\n+3 2 \t# rs8127947\n+ 0.1250 0.8750\n+3 2 \t# rs117674\n+ 0.3083 0.6917\n+3 2 \t# rs198114\n+ 0.4000 0.6000\n+3 2 \t# rs405227\n+ 0.4083 0.5917\n+3 2 \t# rs2827880\n+ 0.1083 0.8917\n+3 2 \t# rs8134936\n+ 0.0667 0.9333\n+3 2 \t# rs2828019\n+ 0.1667 0.8333\n+3 2 \t# rs2828068\n+ 0.3583 0.6417\n+3 2 \t# rs2828098\n+ 0.4000 0.6000\n+3 2 \t# rs9980706\n+ 0.2333 0.7667\n+3 2 \t# rs2828167\n+ 0.2333 0.7667\n+3 2 \t# rs2212575\n+ 0.3417 0.6583\n+3 2 \t# rs1514417\n+ 0.1917 0.8083\n+3 2 \t# rs1514414\n+ 0.4917 0.5083\n+3 2 \t# rs2828457\n+ 0.1583 0.8417\n+3 2 \t# rs2828520\n+ 0.3417 0.6583\n+3 2 \t# rs2828549\n+ 0.0667 0.9333\n+3 2 \t# rs2828622\n+ 0.2083 0.7917\n+3 2 \t# rs9977556\n+ 0.2000 0.8000\n+3 2 \t# rs2154734\n+ 0.3500 0.6500\n+3 2 \t# rs1910670\n+ 0.2667 0.7333\n+3 2 \t# rs11087904\n+ 0.0917 0.9083\n+3 2 \t# rs12627150\n+ 0.2917 0.7083\n+3 2 \t# rs2828914\n+ 0.1417 0.8583\n+3 2 \t# rs2829026\n+ 0.2667 0.7333\n+3 2 \t# rs2829049\n+ 0.4333 0.5667\n+3 2 \t# rs2829086\n+ 0.3000 0.7000\n+3 2 \t# rs12053689\n+ 0.0167 0.9833\n+3 2 \t# rs728067\n+ 0.3833 0.6167\n+3 2 \t# rs4816976\n+ 0.4083 0.5917\n+3 2 \t# rs2829227\n+ 0.1833 0.8167\n+3 2 \t# rs17000204\n+ 0.0833 0.9167\n+3 2 \t# rs2829285\n+ 0.4167 0.5833\n+3 2 \t# rs17000332\n+ 0.0917 0.9083\n+3 2 \t# rs17689314\n+ 0.0750 0.9250\n+3 2 \t# rs4283495\n+ 0.2083 0.7917\n+3 2 \t# rs2154526\n+ 0.4250 0.5750\n+3 2 \t# rs2829558\n+ 0.3500 0.6500\n+3 2 \t# rs12626495\n+ 0.1667 0.8333\n+ 0 0\n+ 0.1 0.000699 0.000751 0.001625 0.000626 0.000902 0.001785 0.000970 0.001647 0.001241 0.000538 0.001138 0.000606 0.000504 0.000859 0.000504 0.001582 0.000504 0.001393 0.000552 0.001420 0.000533 0.000638 0.000596 0.000705 0.000567 0.001541 0.003324 0.001431 0.000703 0.001346 0.001978 0.000846 0.000598 0.000547 0.000887 0.002148 0.000873 0.001850 0.000800 0.000771 0.000785 0.000544 0.001836 0.000556 0.001838 0.000854 0.001010 0.001044 0.000913 0.002090 0.000800 0.003138 0.001451 0.000676 0.001048 0.005681 0.001075 0.001309 0.002052 0.002013 0.001811 0.001415 0.000890 0.000620 0.001575 0.000961 0.000590 0.000592 0.001485 0.000536 0.000692 0.003783 0.000504 0.001024 0.001595 0.002290 0.002725 0.001189 0.000622 0.000829 0.000530 0.001256 0.002036 0.001575 0.001122 0.000963 0.000909 0.001877 0.001159 0.000839 0.002653 0.000589 0.001128 0.001040 0.000572 0.000756 0.000518 0.000842 0.000642 0.000931 0.000852 0.000540 0.001125 0.002038 0.000547 0.000527 0.002150 0.001016 0.000564 0.000620 0.000526 0.001174 0.001572 0.000655 0.000776 0.000504 0.000521 0.000512 0.000629 0.000570 0.000515 0.001805 0.001103 0.001429 0.001403 0.003479 0.001278 0.001141 0.000866 0.000947 0.000979 0.000564 0.003575 0.001911 0.001271 0.000622 0.001919 0.000572 0.000855 0.001534 0.000840 0.000885 0.000505 0.000773 0.002112 0.000568 0.000553 0.000694 0.001058 0.000627 0.002328 0.002346 0.001778 0.000921 0.000535 0.000610 0.000785 0.000673 0.000625 0.000566 0.002054 0.001007 0.000625 0.000545 0.000733 0.000851 0.000544 0.001300 0.000559 0.000871 0.000571 0.000574 0.000588 0.000690 0.002225 0.000511 0.000839 0.001752 0.000544 0.001807 0.000633 0.000547 0.001712 0.001575 0.000512 0.000567 0.000586 0.001449 0.000862 0.001286 0.000506 0.000518 0.000545 0.001830 0.000665 0.000949 0.001156 0.001236 0.000501\n+ 1 2.0 1.0\n' |
| b |
| diff -r 000000000000 -r 9e6a43112688 test-data/map_1.21 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/map_1.21 Sat Dec 09 05:58:25 2017 -0500 |
| b |
| b'@@ -0,0 +1,201 @@\n+#Chr Genpos Marker Physpos Nr\n+ 21 0.70496629 rs1296971 13609442 1\n+ 21 0.77494263 rs468601 13769165 2\n+ 21 0.85010932 rs2821973 13899316 3\n+ 21 1.01291458 rs1929150 14051249 4\n+ 21 1.07552959 rs2822124 14088675 5\n+ 21 1.16577144 rs2775054 14121682 6\n+ 21 1.34457997 rs7276618 14197852 7\n+ 21 1.44169062 rs392812 14252347 8\n+ 21 1.60661592 rs2822368 14311592 9\n+ 21 1.73090413 rs6516610 14385827 10\n+ 21 1.78470487 rs447455 14502698 11\n+ 21 1.89865013 rs437521 14513560 12\n+ 21 1.95928889 rs2822554 14585162 13\n+ 21 2.00968909 rs2822572 14618073 14\n+ 21 2.09569547 rs13050350 14653413 15\n+ 21 2.14611500 rs2142236 14748155 16\n+ 21 2.30459845 rs2822677 14767432 17\n+ 21 2.35507107 rs2822696 14783326 18\n+ 21 2.49458320 rs376635 14788185 19\n+ 21 2.54981913 rs2822765 14843387 20\n+ 21 2.69205997 rs2822780 14875052 21\n+ 21 2.74542953 rs465340 14884525 22\n+ 21 2.80926447 rs1888398 14981052 23\n+ 21 2.86888387 rs458052 15013563 24\n+ 21 2.93942924 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| b |
| diff -r 000000000000 -r 9e6a43112688 test-data/pedin_1.21 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pedin_1.21 Sat Dec 09 05:58:25 2017 -0500 |
| b |
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