| Previous changeset 1:f35b2f3ca139 (2013-10-11) Next changeset 3:ae44396108f5 (2015-08-05) |
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Commit message:
Uploaded v0.0.7 with embedded citations |
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modified:
tools/predictnls/README.rst tools/predictnls/predictnls.xml |
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| diff -r f35b2f3ca139 -r 9f2088ca5f6a tools/predictnls/README.rst --- a/tools/predictnls/README.rst Fri Oct 11 04:35:15 2013 -0400 +++ b/tools/predictnls/README.rst Fri Nov 21 07:00:43 2014 -0500 |
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| @@ -16,14 +16,14 @@ http://dx.doi.org/10.1093/embo-reports/kvd092 This wrapper is available from the Galaxy Tool Shed at -http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp +http://toolshed.g2.bx.psu.edu/view/peterjc/predictnls Automatic Installation ====================== This Galaxy tool is self contained, and so should install automatically via the -Galaxy Tool Shed. See http://toolshed.g2.bx.psu.edu/view/peterjc/predictnls +Galaxy Tool Shed. Manual Installation @@ -43,10 +43,10 @@ <tool file="protein_analysis/predictnls.xml" /> -If you want to run the unit tests, also add this to tool_conf.xml.sample, and -copy the test files under test-data, then run:: +If you wish to run the unit tests, also move/copy the ``test-data/`` files +under Galaxy's ``test-data/`` folder. Then:: - ./run_functional_tests.sh -id predictnls + ./run_tests.sh -id predictnls That's it. @@ -63,13 +63,14 @@ - Use reStructuredText for this README file. - Updated citation information (Cock et al. 2013). - Development moved to GitHub, https://github.com/peterjc/pico_galaxy +v0.0.7 - Tool definition now embeds citation information. ======= ====================================================================== Developers ========== -This script and related tools are being developed on the following hg branch: +This script and related tools were initially developed on the following hg branch: http://bitbucket.org/peterjc/galaxy-central/src/tools For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use |
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| diff -r f35b2f3ca139 -r 9f2088ca5f6a tools/predictnls/predictnls.xml --- a/tools/predictnls/predictnls.xml Fri Oct 11 04:35:15 2013 -0400 +++ b/tools/predictnls/predictnls.xml Fri Nov 21 07:00:43 2014 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="predictnls" name="PredictNLS" version="0.0.6"> +<tool id="predictnls" name="PredictNLS" version="0.0.7"> <description>Find nuclear localization signals (NLSs) in protein sequences</description> <command interpreter="python"> predictnls.py $fasta_file $tabular_file @@ -94,4 +94,8 @@ This wrapper is available to install into other Galaxy Instances via the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/predictnls </help> + <citations> + <citation type="doi">10.7717/peerj.167</citation> + <citation type="doi">10.1093/embo-reports/kvd092</citation> + </citations> </tool> |