| Previous changeset 10:649cb1bafd3e (2018-08-09) Next changeset 12:38f509903a0b (2019-10-01) |
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Commit message:
planemo upload for repository https://github.com/HegemanLab/w4mclassfilter_galaxy_wrapper/tree/master commit 32cf96ed6c39a93eb9c6cf00494b128bd3c3febe |
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modified:
w4mclassfilter.xml |
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| diff -r 649cb1bafd3e -r 9f5c0e23c205 w4mclassfilter.xml --- a/w4mclassfilter.xml Thu Aug 09 13:00:51 2018 -0400 +++ b/w4mclassfilter.xml Mon Sep 03 22:34:35 2018 -0400 |
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| @@ -1,11 +1,11 @@ -<tool id="w4mclassfilter" name="W4m Data Subset" version="0.98.10"> +<tool id="w4mclassfilter" name="W4m Data Subset" version="0.98.11"> <description>Filter W4m data by values or metadata</description> <!-- Here is the hyphenation standard that I *try* to apply consistently in my documentation: http://www.sandranoonan.com/dont-let-hyphenation-drive-crazy/ --> <requirements> <!-- <requirement type="package" version="6.2">readline</requirement> --> <requirement type="package" version="3.4.1">r-base</requirement> <requirement type="package" version="1.1_4">r-batch</requirement> - <requirement type="package" version="0.98.7">w4mclassfilter</requirement> + <requirement type="package" version="0.98.8">w4mclassfilter</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ Rscript $__tool_directory__/w4mclassfilter_wrapper.R @@ -35,7 +35,6 @@ <sanitizer> <valid initial="string.letters"> <add preset="string.digits"/> - <add value="-" /> <!-- dash, hyphen --> <add value="." /> <!-- dot, period --> <add value="_" /> <!-- underscore --> </valid> @@ -84,7 +83,6 @@ <valid initial="string.letters"> <add preset="string.digits"/> <add value="," /> <!-- comma --> - <add value="-" /> <!-- dash, hyphen --> <add value="." /> <!-- dot, period --> <add value=":" /> <!-- colon --> <add value="_" /> <!-- underscore --> @@ -587,7 +585,7 @@ | Column that names the sample-class (default = '``class``') - | name of the column in **sampleMetadata** that has the values to be tested against the '``Names of sample-classes``' input parameter + | name of the column in **sampleMetadata** that has the values to be tested against the '``Names of sample-classes``' input parameter; only letters, digits, periods, and underscores are permitted. | Names of sample-classes (default = no names) @@ -699,9 +697,9 @@ in the output. Each range is a string of three colon-separated values (e.g., "mz:200:800") in the following order: -- the **name of a column of `variableMetadata`** which must have numerical data (e.g., "mz"); -- the **minimum allowed value** in that column for the feature to be retained (e.g., 200); -- the **maximum allowed value** (e.g., 800). +- the **name of a column of `variableMetadata`** which must have numerical data (only letters, digits, periods, and underscores are permitted in the name itself), e.g., 'mz'; +- the **minimum allowed value** in that column for the feature to be retained, e.g., '200'; +- the **maximum allowed value**, e.g., '800'. Note for the range specification strings: |