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Commit message:
initial uploaded |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r 9fcaaedbbfd6 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Oct 28 18:34:52 2013 -0400 |
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| @@ -0,0 +1,29 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="bowtie" version="1.0.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie/1.0.0/bowtie-1.0.0-src.zip</action> + <action type="shell_command">make</action> + <action type="move_file"> + <source>bowtie</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie-build</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie-inspect</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> +Compiling Bowtie requires libpthread to be present on your system. + </readme> + </package> +</tool_dependency> |