| Previous changeset 45:ffc66227835f (2017-12-01) Next changeset 47:851c8bbb3214 (2017-12-01) |
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Commit message:
Uploaded |
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modified:
bin/align.pm |
| b |
| diff -r ffc66227835f -r a03408665904 bin/align.pm --- a/bin/align.pm Fri Dec 01 08:06:35 2017 -0500 +++ b/bin/align.pm Fri Dec 01 08:14:22 2017 -0500 |
| b |
| @@ -46,8 +46,8 @@ my $funi = $col_prefix.'unique_mappers.fastq'; my $frej = $col_prefix.'unmapped.fastq'; - my $repartition = $prefix.'distribution.txt'; - my $png_rep = $prefix.'distribution.png'; + my $repartition = $out_prefix.'distribution.txt'; + my $png_rep = $out_prefix.'distribution.png'; my ( %duplicates, %genome_hits) ; #alignement to the first reference @@ -77,9 +77,9 @@ histogram($size_mappedHashR, $png_rep, $total); - my $dup = $prefix.'dup_mapnum.txt'; - my $dup_u = $prefix .'dup_unique.txt'; - my $dup_r = $prefix .'dup_nonmapp.txt'; + my $dup = $out_prefix.'dup_mapnum.txt'; + my $dup_u = $out_prefix .'dup_unique.txt'; + my $dup_r = $out_prefix .'dup_nonmapp.txt'; open(my $tab,">".$dup) || die "cannot open output txt file\n"; open(my $tab_r,">".$dup_r) || die "cannot open output txt file\n"; open(my $tab_u,">".$dup_u) || die "cannot open output txt file\n"; |