| Previous changeset 19:439e75416e1a (2018-04-05) Next changeset 21:e4287c038599 (2018-08-22) |
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Commit message:
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 38cfe39e3b3c82bbc0c2013e3068bd71adc3a9cb |
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modified:
bamCompare.xml deepTools_macros.xml |
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| diff -r 439e75416e1a -r a0ad8afc1e5f bamCompare.xml --- a/bamCompare.xml Thu Apr 05 10:55:44 2018 -0400 +++ b/bamCompare.xml Mon Jul 09 18:48:13 2018 -0400 |
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| @@ -46,6 +46,7 @@ #end if --operation $comparison.type + $exactScaling #if $comparison.type in ['ratio','log2']: --pseudocount $comparison.pseudocount @@ -145,6 +146,7 @@ </when> </conditional> + <expand macro="exactScaling" /> <param name="outFileFormat" type="select" label="Coverage file format"> <option value="bigwig" selected="true">bigwig</option> <option value="bedgraph">bedgraph</option> |
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| diff -r 439e75416e1a -r a0ad8afc1e5f deepTools_macros.xml --- a/deepTools_macros.xml Thu Apr 05 10:55:44 2018 -0400 +++ b/deepTools_macros.xml Mon Jul 09 18:48:13 2018 -0400 |
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| @@ -1,10 +1,10 @@ <macros> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">3.0.2</token> + <token name="@WRAPPER_VERSION@">3.1.0</token> <xml name="requirements"> <requirements> - <requirement type="package" version="3.0.2">deeptools</requirement> + <requirement type="package" version="3.1.0">deeptools</requirement> <requirement type="package" version="1.7">samtools</requirement> </requirements> <expand macro="stdio" /> @@ -603,6 +603,18 @@ (default: False)" /> </xml> + <xml name="exactScaling"> + <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False" + label="Compute an exact scaling factor" + help="Compute an exact scaling factor rather than one based on + sampled reads. This is only useful in cases where you are + filtering some alignments out AND this are both rare and + tend to clump together in the genome. In such cases the + region-based sampling employed by deepTools would produce + inaccurate scaling factors. Note that this option results + in the process taking significantly more time to complete." /> + </xml> + <xml name="input_save_matrix_values"> <param argument="--saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/> </xml> |