Galaxy |

Changeset 5:a166647c366a (2024-10-30)

Previous changeset 4:eafeb0b89ece (2024-06-03)

Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity_lib commit 5f71b597c9495eae67a447744fded834f56ca1f7

diff -r eafeb0b89ece -r a166647c366a qiime2__diversity_lib__weighted_unifrac.xml
--- a/qiime2__diversity_lib__weighted_unifrac.xml Mon Jun 03 23:21:59 2024 +0000
+++ b/qiime2__diversity_lib__weighted_unifrac.xml Wed Oct 30 19:44:48 2024 +0000

[

@@ -6,14 +6,17 @@
-->

-<tool name="qiime2 diversity-lib weighted-unifrac" id="qiime2__diversity_lib__weighted_unifrac" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 diversity-lib weighted-unifrac" id="qiime2__diversity_lib__weighted_unifrac" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
     <description>Weighted Unifrac</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
     </requirements>
     <version_command>q2galaxy version diversity_lib</version_command>
     <command detect_errors="exit_code">q2galaxy run diversity_lib weighted_unifrac '$inputs'</command>
@@ -23,8 +26,8 @@
     <inputs>
         <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency]" help="[required]  The feature table containing the samples for which Weighted Unifrac should be computed.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="FeatureTable[Frequency]"/>
                 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
-                <filter type="add_value" value="FeatureTable[Frequency]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[RelativeFrequency]']</validator>
         </param>

diff -r eafeb0b89ece -r a166647c366a test-data/alpha_passthrough.test0.feature-table.qza

Binary file test-data/alpha_passthrough.test0.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_passthrough.test0.feature-table.qza

Binary file test-data/beta_passthrough.test0.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_passthrough.test1.feature-table.qza

Binary file test-data/beta_passthrough.test1.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_passthrough.test2.feature-table.qza

Binary file test-data/beta_passthrough.test2.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_passthrough.test3.feature-table.qza

Binary file test-data/beta_passthrough.test3.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_meta_passthrough.test0.feature-table1.qza

Binary file test-data/beta_phylogenetic_meta_passthrough.test0.feature-table1.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_meta_passthrough.test0.feature-table2.qza

Binary file test-data/beta_phylogenetic_meta_passthrough.test0.feature-table2.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny1.qza

Binary file test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny1.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny2.qza

Binary file test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny2.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_meta_passthrough.test1.feature-table1.qza

Binary file test-data/beta_phylogenetic_meta_passthrough.test1.feature-table1.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_meta_passthrough.test1.feature-table2.qza

Binary file test-data/beta_phylogenetic_meta_passthrough.test1.feature-table2.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_meta_passthrough.test1.phylogeny.qza

Binary file test-data/beta_phylogenetic_meta_passthrough.test1.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_meta_passthrough.test2.feature-table1.qza

Binary file test-data/beta_phylogenetic_meta_passthrough.test2.feature-table1.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_meta_passthrough.test2.feature-table2.qza

Binary file test-data/beta_phylogenetic_meta_passthrough.test2.feature-table2.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny1.qza

Binary file test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny1.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny2.qza

Binary file test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny2.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test0.feature-table.qza

Binary file test-data/beta_phylogenetic_passthrough.test0.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test0.phylogeny.qza

Binary file test-data/beta_phylogenetic_passthrough.test0.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test1.feature-table.qza

Binary file test-data/beta_phylogenetic_passthrough.test1.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test1.phylogeny.qza

Binary file test-data/beta_phylogenetic_passthrough.test1.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test2.feature-table.qza

Binary file test-data/beta_phylogenetic_passthrough.test2.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test2.phylogeny.qza

Binary file test-data/beta_phylogenetic_passthrough.test2.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test3.feature-table.qza

Binary file test-data/beta_phylogenetic_passthrough.test3.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test3.phylogeny.qza

Binary file test-data/beta_phylogenetic_passthrough.test3.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test4.feature-table.qza

Binary file test-data/beta_phylogenetic_passthrough.test4.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test4.phylogeny.qza

Binary file test-data/beta_phylogenetic_passthrough.test4.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test5.feature-table.qza

Binary file test-data/beta_phylogenetic_passthrough.test5.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test5.phylogeny.qza

Binary file test-data/beta_phylogenetic_passthrough.test5.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test6.feature-table.qza

Binary file test-data/beta_phylogenetic_passthrough.test6.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/beta_phylogenetic_passthrough.test6.phylogeny.qza

Binary file test-data/beta_phylogenetic_passthrough.test6.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/bray_curtis.test0.feature-table.qza

Binary file test-data/bray_curtis.test0.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/bray_curtis.test1.feature-table.qza

Binary file test-data/bray_curtis.test1.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/bray_curtis.test2.feature-table.qza

Binary file test-data/bray_curtis.test2.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/faith_pd.test0.feature-table.qza

Binary file test-data/faith_pd.test0.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/faith_pd.test0.phylogeny.qza

Binary file test-data/faith_pd.test0.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/jaccard.test0.feature-table.qza

Binary file test-data/jaccard.test0.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/jaccard.test1.feature-table.qza

Binary file test-data/jaccard.test1.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/jaccard.test2.feature-table.qza

Binary file test-data/jaccard.test2.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/observed_features.test0.feature-table.qza

Binary file test-data/observed_features.test0.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/pielou_evenness.test0.feature-table.qza

Binary file test-data/pielou_evenness.test0.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/pielou_evenness.test1.feature-table.qza

Binary file test-data/pielou_evenness.test1.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/shannon_entropy.test0.feature-table.qza

Binary file test-data/shannon_entropy.test0.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/shannon_entropy.test1.feature-table.qza

Binary file test-data/shannon_entropy.test1.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/unweighted_unifrac.test0.feature-table.qza

Binary file test-data/unweighted_unifrac.test0.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/unweighted_unifrac.test0.phylogeny.qza

Binary file test-data/unweighted_unifrac.test0.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/unweighted_unifrac.test1.feature-table.qza

Binary file test-data/unweighted_unifrac.test1.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/unweighted_unifrac.test1.phylogeny.qza

Binary file test-data/unweighted_unifrac.test1.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/unweighted_unifrac.test2.feature-table.qza

Binary file test-data/unweighted_unifrac.test2.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/unweighted_unifrac.test2.phylogeny.qza

Binary file test-data/unweighted_unifrac.test2.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/unweighted_unifrac.test3.feature-table.qza

Binary file test-data/unweighted_unifrac.test3.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/unweighted_unifrac.test3.phylogeny.qza

Binary file test-data/unweighted_unifrac.test3.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/weighted_unifrac.test0.feature-table.qza

Binary file test-data/weighted_unifrac.test0.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/weighted_unifrac.test0.phylogeny.qza

Binary file test-data/weighted_unifrac.test0.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/weighted_unifrac.test1.feature-table.qza

Binary file test-data/weighted_unifrac.test1.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/weighted_unifrac.test1.phylogeny.qza

Binary file test-data/weighted_unifrac.test1.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/weighted_unifrac.test2.feature-table.qza

Binary file test-data/weighted_unifrac.test2.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/weighted_unifrac.test2.phylogeny.qza

Binary file test-data/weighted_unifrac.test2.phylogeny.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/weighted_unifrac.test3.feature-table.qza

Binary file test-data/weighted_unifrac.test3.feature-table.qza has changed

diff -r eafeb0b89ece -r a166647c366a test-data/weighted_unifrac.test3.phylogeny.qza

Binary file test-data/weighted_unifrac.test3.phylogeny.qza has changed