| Previous changeset 0:29117f5b2cd9 (2020-04-08) Next changeset 2:3176cbad2800 (2020-04-27) |
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Commit message:
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed" |
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modified:
garnett_get_feature_genes.xml garnett_macros.xml |
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| diff -r 29117f5b2cd9 -r a16b409dee64 garnett_get_feature_genes.xml --- a/garnett_get_feature_genes.xml Wed Apr 08 06:29:13 2020 -0400 +++ b/garnett_get_feature_genes.xml Fri Apr 24 11:22:57 2020 -0400 |
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| @@ -5,7 +5,14 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - garnett_get_feature_genes.R --classifier-object '${classifier_object}' --node '${node}' --database '${database}' --convert-ids '${convert_ids}' --output-path '${output_path}' + garnett_get_feature_genes.R --classifier-object '${classifier_object}' --database '${database}' --output-path '${output_path}' + + #if $node + --node '${node}' + #end if + #if $convert_ids + --convert-ids '${convert_ids}' + #end if ]]></command> <inputs> <param type="data" name="classifier_object" label="classifier object" format="rdata" help="Path to the object of class garnett_classifier, which is either trained via garnett_train_classifier.R or obtained elsewhere" /> |
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| diff -r 29117f5b2cd9 -r a16b409dee64 garnett_macros.xml --- a/garnett_macros.xml Wed Apr 08 06:29:13 2020 -0400 +++ b/garnett_macros.xml Fri Apr 24 11:22:57 2020 -0400 |
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| @@ -4,7 +4,7 @@ <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.3">garnett-cli</requirement> + <requirement type="package" version="0.0.5">garnett-cli</requirement> <yield/> </requirements> </xml> @@ -21,7 +21,7 @@ <citations> <citation type="bibtex"> @article{, - url = {https://doi.org/10.1038/s41592-019-0535-3}, + url = {https://doi.org/10.1038/s41592-019-0535-3}, author = {Hannah A. Pliner and Jay Shendure and Cole Trapnell}, title = {Supervised classification enables rapid annotation of cell atlases}, journal = {Nature Methods} @@ -38,7 +38,7 @@ } </citation> <yield /> + <citation type="doi">10.1101/2020.04.08.032698</citation> </citations> </xml> </macros> - |