| Previous changeset 9:3b8fecdf9058 (2019-08-27) Next changeset 11:30c3906fbf43 (2019-12-05) |
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Commit message:
"planemo upload commit 5d3fc4232e0e036ac1ed9e2c36adc41d6af4987f" |
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modified:
macros.xml umi-tools_group.xml |
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| diff -r 3b8fecdf9058 -r a24f5b991320 macros.xml --- a/macros.xml Tue Aug 27 17:10:29 2019 -0400 +++ b/macros.xml Tue Sep 10 14:27:38 2019 -0400 |
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| @@ -3,8 +3,6 @@ <macro name="barcode_sanitizer" > <sanitizer invalid_char=""> <valid initial="string.letters,string.digits"> - <add value="(" /><!-- left bracket --> - <add value=")" /><!-- right bracket --> <add value="*" /><!-- asterisk --> <add value="," /><!-- comma --> <add value="." /><!-- period --> @@ -13,8 +11,15 @@ <add value=">" /><!-- greater than --> <add value="?" /><!-- question mark --> <add value="_" /><!-- underscore --> + <add value="(" /><!-- left bracket --> + <add value=")" /><!-- right bracket --> + <add value="["/> <!-- left square bracket --> + <add value="]"/> <!-- right square bracket --> <add value="{"/><!-- left brace --> <add value="}"/><!-- right brace --> + <add value="^"/> <!-- caret --> + <add value="-"/> + <add value="!"/> </valid> </sanitizer> </macro> |
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| diff -r 3b8fecdf9058 -r a24f5b991320 umi-tools_group.xml --- a/umi-tools_group.xml Tue Aug 27 17:10:29 2019 -0400 +++ b/umi-tools_group.xml Tue Sep 10 14:27:38 2019 -0400 |
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| @@ -38,7 +38,7 @@ #end if --output-bam -I '$input_file' -S grouped.bam && - samtools sort grouped.bam -@ \${GALAXY_SLOTS:-1} -o '$output' -O BAM + samtools sort grouped.bam -@ \${GALAXY_SLOTS:-1} -T "\${TMPDIR:-.}" -o '$output' -O BAM ]]></command> <inputs> <param name="input" type="data" format="sam,bam" label="Reads to group in SAM or BAM format" /> |