| Previous changeset 8:9a168aa68f06 (2024-01-18) Next changeset 10:c60b17456297 (2024-01-20) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 1b7e6ba50013775621cbdfdc101152a7f5c5e15b |
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modified:
jbrowse2.py |
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| diff -r 9a168aa68f06 -r a26c41e304c3 jbrowse2.py --- a/jbrowse2.py Thu Jan 18 06:41:25 2024 +0000 +++ b/jbrowse2.py Fri Jan 19 03:08:28 2024 +0000 |
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| @@ -375,7 +375,6 @@ class JbrowseConnector(object): def __init__(self, outdir, genomes): - self.usejson = True self.giURL = GALAXY_INFRASTRUCTURE_URL self.outdir = outdir os.makedirs(self.outdir, exist_ok=True) @@ -931,13 +930,13 @@ }, "displays": [ { + "type": "LinearBasicDisplay", + "displayId": "%s-LinearBasicDisplay" % tId, + }, + { "type": "LinearPileupDisplay", "displayId": "%s-LinearPileupDisplay" % tId, }, - { - "type": "LinearBasicDisplay", - "displayId": "%s-LinearBasicDisplay" % tId, - }, {"type": "LinearArcDisplay", "displayId": "%s-LinearArcDisplay" % tId}, ], } @@ -1427,8 +1426,7 @@ jc.add_general_configuration(general_data) x = open(args.xml, "r").read() jc.config_json["tracks"] = jc.tracksToAdd - if jc.usejson: - jc.write_config() + jc.write_config() jc.add_default_session(default_session_data) # jc.text_index() not sure what broke here. |