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tassel.xml |
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| diff -r 4ca9252178df -r a29a0f2c0897 tassel.xml --- a/tassel.xml Wed Jan 03 13:41:53 2024 +0000 +++ b/tassel.xml Mon Jan 15 13:14:13 2024 +0000 |
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| @@ -2,14 +2,11 @@ <description>Software to evaluate traits associations, evolutionary patterns, and linkage disequilibrium</description> <requirements> <requirement type="package" version="5.2.89">tassel</requirement> - <requirement type="package" version="8.0.302">openjdk</requirement> </requirements> - <stdio> <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR --> <exit_code range="1:" level="fatal" /> </stdio> - <command>tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/ #if $analysis_opts.fonction_selector == "mlm": -fork1 -h $hapmap -filterAlign -filterAlignMinFreq $filterAlignMinFreq @@ -136,47 +133,46 @@ <output name="output2" value="Allele_effects.txt"/> </test> </tests> - <help><![CDATA[ - - -.. class:: infomark - -**Tassel5** version 5.2.40 - -.. class:: infomark - -**Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA) - -.. class:: infomark - -**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr - ---------------------------------------------------- - -======= -Tassel5 -======= - ------------ -Description ------------ - - | Software to evaluate traits associations, evolutionary patterns, and linkage disequilibrium. - | For further informations on tassel, please visit the website_. - -.. _website: http://www.maizegenetics.net/tassel/ - ------------- -Dependencies ------------- -Tassel5 - tassel_ 5.2.40, Conda version - -.. _tassel: https://anaconda.org/bioconda/tassel - + .. class:: infomark + + **Tassel5** version 5.2.40 + + .. class:: infomark + + **Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA) + + .. class:: infomark + + **Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr + + --------------------------------------------------- + + ======= + Tassel5 + ======= + + ----------- + Description + ----------- + + | Software to evaluate traits associations, evolutionary patterns, and linkage disequilibrium. + | For further informations on tassel, please visit the website_. + + .. _website: http://www.maizegenetics.net/tassel/ + + ------------ + Dependencies + ------------ + + Tassel5 + + tassel_ 5.2.40, Conda version + + .. _tassel: https://anaconda.org/bioconda/tassel + ]]></help> <citations> <citation type="doi">10.1093/bioinformatics/btm308</citation> </citations> -</tool> \ No newline at end of file +</tool> |