Repository 'tax4fun'
hg clone https://toolshed.g2.bx.psu.edu/repos/sarahinraauzeville/tax4fun

Changeset 3:a31d9a7155b3 (2017-12-19)
Previous changeset 2:64e94a224fb8 (2017-12-05) Next changeset 4:efe8a7d706f5 (2017-12-19)
Commit message:
Workflow readyto use
added:
Galaxy-Workflow-Workflow_constructed_from_history__TAX4FUN_.ga
b
diff -r 64e94a224fb8 -r a31d9a7155b3 Galaxy-Workflow-Workflow_constructed_from_history__TAX4FUN_.ga
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/Galaxy-Workflow-Workflow_constructed_from_history__TAX4FUN_.ga Tue Dec 19 07:30:16 2017 -0500
[
b'@@ -0,0 +1,234 @@\n+{\n+    "a_galaxy_workflow": "true", \n+    "annotation": "", \n+    "format-version": "0.1", \n+    "name": "Workflow constructed from history \'TAX4FUN\'", \n+    "steps": {\n+        "0": {\n+            "annotation": "", \n+            "content_id": null, \n+            "id": 0, \n+            "input_connections": {}, \n+            "inputs": [\n+                {\n+                    "description": "", \n+                    "name": "Input Dataset"\n+                }\n+            ], \n+            "label": null, \n+            "name": "Input dataset", \n+            "outputs": [], \n+            "position": {\n+                "left": 200, \n+                "top": 311\n+            }, \n+            "tool_errors": null, \n+            "tool_id": null, \n+            "tool_state": "{\\"name\\": \\"Input Dataset\\"}", \n+            "tool_version": null, \n+            "type": "data_input", \n+            "uuid": "44401006-15ba-4ffd-9924-a4f96ffc80c0", \n+            "workflow_outputs": []\n+        }, \n+        "1": {\n+            "annotation": "", \n+            "content_id": "Cut1", \n+            "id": 1, \n+            "input_connections": {}, \n+            "inputs": [], \n+            "label": null, \n+            "name": "Cut", \n+            "outputs": [\n+                {\n+                    "name": "out_file1", \n+                    "type": "tabular"\n+                }\n+            ], \n+            "position": {\n+                "left": 771, \n+                "top": 285\n+            }, \n+            "post_job_actions": {}, \n+            "tool_errors": null, \n+            "tool_id": "Cut1", \n+            "tool_state": "{\\"__page__\\": 0, \\"__rerun_remap_job_id__\\": null, \\"delimiter\\": \\"\\\\\\"T\\\\\\"\\", \\"columnList\\": \\"\\\\\\"c9\\\\\\"\\", \\"input\\": \\"null\\", \\"chromInfo\\": \\"\\\\\\"/galaxydata/galaxy-preprod/my_tool-data/shared/ucsc/chrom/?.len\\\\\\"\\"}", \n+            "tool_version": "1.0.2", \n+            "type": "tool", \n+            "uuid": "5ed51d04-70d0-43b1-b1f2-83659f2514dc", \n+            "workflow_outputs": []\n+        }, \n+        "2": {\n+            "annotation": "", \n+            "content_id": "FROGS_biom_to_stdBiom", \n+            "id": 2, \n+            "input_connections": {\n+                "input_biom": {\n+                    "id": 0, \n+                    "output_name": "output"\n+                }\n+            }, \n+            "inputs": [], \n+            "label": null, \n+            "name": "FROGS BIOM to std BIOM", \n+            "outputs": [\n+                {\n+                    "name": "output_biom", \n+                    "type": "biom1"\n+                }, \n+                {\n+                    "name": "output_metadata", \n+                    "type": "tabular"\n+                }\n+            ], \n+            "position": {\n+                "left": 371, \n+                "top": 280\n+            }, \n+            "post_job_actions": {}, \n+            "tool_errors": null, \n+            "tool_id": "FROGS_biom_to_stdBiom", \n+            "tool_state": "{\\"__page__\\": 0, \\"input_biom\\": \\"null\\", \\"chromInfo\\": \\"\\\\\\"/galaxydata/galaxy-preprod/my_tool-data/shared/ucsc/chrom/?.len\\\\\\"\\", \\"__rerun_remap_job_id__\\": null}", \n+            "tool_version": "1.1.0", \n+            "type": "tool", \n+            "uuid": "551ee02f-e9de-4809-a2a2-67f16b98889c", \n+            "workflow_outputs": []\n+        }, \n+        "3": {\n+            "annotation": "", \n+            "content_id": "FROGS_biom_to_tsv", \n+            "id": 3, \n+            "input_connections": {\n+                "biom_file": {\n+                    "id": 2, \n+                    "output_name": "output_biom"\n+                }\n+            }, \n+            "inputs": [], \n+            "label": null, \n+            "name": "FROGS BIOM to TSV", \n+            "outputs": [\n+                {\n+                    "name": "tsv_file", \n+                    "type": "tabular"\n+                }, \n+                {\n+                    "name": "multi_affi_file", \n+                    '..b'biom_file\\": \\"null\\"}", \n+            "tool_version": "2.1.0", \n+            "type": "tool", \n+            "uuid": "70d4fb8a-0079-4d66-b43b-2f55164333d6", \n+            "workflow_outputs": []\n+        }, \n+        "4": {\n+            "annotation": "", \n+            "content_id": "Cut1", \n+            "id": 4, \n+            "input_connections": {\n+                "input": {\n+                    "id": 3, \n+                    "output_name": "tsv_file"\n+                }\n+            }, \n+            "inputs": [], \n+            "label": null, \n+            "name": "Cut", \n+            "outputs": [\n+                {\n+                    "name": "out_file1", \n+                    "type": "tabular"\n+                }\n+            ], \n+            "position": {\n+                "left": 775, \n+                "top": 386\n+            }, \n+            "post_job_actions": {}, \n+            "tool_errors": null, \n+            "tool_id": "Cut1", \n+            "tool_state": "{\\"__page__\\": 0, \\"__rerun_remap_job_id__\\": null, \\"delimiter\\": \\"\\\\\\"T\\\\\\"\\", \\"columnList\\": \\"\\\\\\"c1\\\\\\"\\", \\"input\\": \\"null\\", \\"chromInfo\\": \\"\\\\\\"/galaxydata/galaxy-preprod/my_tool-data/shared/ucsc/chrom/?.len\\\\\\"\\"}", \n+            "tool_version": "1.0.2", \n+            "type": "tool", \n+            "uuid": "e5c36ea2-97f1-45e7-9015-bfe6687a3e33", \n+            "workflow_outputs": []\n+        }, \n+        "5": {\n+            "annotation": "", \n+            "content_id": "Paste1", \n+            "id": 5, \n+            "input_connections": {\n+                "input1": {\n+                    "id": 1, \n+                    "output_name": "out_file1"\n+                }, \n+                "input2": {\n+                    "id": 4, \n+                    "output_name": "out_file1"\n+                }\n+            }, \n+            "inputs": [], \n+            "label": null, \n+            "name": "Paste", \n+            "outputs": [\n+                {\n+                    "name": "out_file1", \n+                    "type": "input"\n+                }\n+            ], \n+            "position": {\n+                "left": 943, \n+                "top": 318\n+            }, \n+            "post_job_actions": {}, \n+            "tool_errors": null, \n+            "tool_id": "Paste1", \n+            "tool_state": "{\\"input2\\": \\"null\\", \\"__page__\\": 0, \\"input1\\": \\"null\\", \\"__rerun_remap_job_id__\\": null, \\"delimiter\\": \\"\\\\\\"T\\\\\\"\\", \\"chromInfo\\": \\"\\\\\\"/galaxydata/galaxy-preprod/my_tool-data/shared/ucsc/chrom/?.len\\\\\\"\\"}", \n+            "tool_version": "1.0.0", \n+            "type": "tool", \n+            "uuid": "ac6b2cd5-16b0-4010-a3c4-e89f8aad9289", \n+            "workflow_outputs": []\n+        }, \n+        "6": {\n+            "annotation": "", \n+            "content_id": "sm_Tax4Fun", \n+            "id": 6, \n+            "input_connections": {\n+                "input": {\n+                    "id": 5, \n+                    "output_name": "out_file1"\n+                }\n+            }, \n+            "inputs": [], \n+            "label": null, \n+            "name": "Tax4Fun", \n+            "outputs": [\n+                {\n+                    "name": "output", \n+                    "type": "txt"\n+                }\n+            ], \n+            "position": {\n+                "left": 1123, \n+                "top": 322\n+            }, \n+            "post_job_actions": {}, \n+            "tool_errors": null, \n+            "tool_id": "sm_Tax4Fun", \n+            "tool_state": "{\\"input\\": \\"null\\", \\"__rerun_remap_job_id__\\": null, \\"chromInfo\\": \\"\\\\\\"/galaxydata/galaxy-preprod/my_tool-data/shared/ucsc/chrom/?.len\\\\\\"\\", \\"reference\\": \\"\\\\\\"/galaxydata/galaxy-preprod/my_tools/sm_Tax4Fun/SILVA123/\\\\\\"\\", \\"__page__\\": 0}", \n+            "tool_version": "1.0.0", \n+            "type": "tool", \n+            "uuid": "65fef27b-a217-4ec0-991d-5e68300b3a96", \n+            "workflow_outputs": []\n+        }\n+    }, \n+    "uuid": "2fb1110e-3dce-4a71-9516-988a5ff7ca17"\n+}\n\\ No newline at end of file\n'