| Previous changeset 0:75340a5e5fb0 (2019-09-16) Next changeset 2:2e446b0cb437 (2020-03-03) |
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Commit message:
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 08ac0ad9182623944c4546f8ea8db6a1a537f7eb |
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modified:
monocle3-create.xml monocle3-macros.xml |
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| diff -r 75340a5e5fb0 -r a34f243f55a4 monocle3-create.xml --- a/monocle3-create.xml Mon Sep 16 09:52:55 2019 -0400 +++ b/monocle3-create.xml Wed Jan 29 10:40:25 2020 -0500 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy0"> +<tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy1"> <description>a Monocle3 object from input data</description> <macros> <import>monocle3-macros.xml</import> @@ -26,19 +26,19 @@ ]]></command> <inputs> - <param name="expression_matrix" argument="--expression-matrix" type="data" format="tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/> + <param name="expression_matrix" argument="--expression-matrix" type="data" format="tabular,tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/> <param name="expression_matrix_format" type="select" label="Format of expression matrix"> <option value="rds" selected="true">RDS</option> <option value="tsv">TSV</option> <option value="csv">CSV</option> </param> - <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/> + <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/> <param name="cell_metadata_format" type="select" label="Format of cell metadata"> <option value="rds" selected="true">RDS</option> <option value="tsv">TSV</option> <option value="csv">CSV</option> </param> - <param name="gene_annotation" argument="--gene-annotation" optional="true" type="data" format="tsv,csv,rdata" label="Per-gene annotation, optional. Row names must match the row names of the expression matrix. Provide as TSV, CSV or RDS."/> + <param name="gene_annotation" argument="--gene-annotation" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-gene annotation, optional. Row names must match the row names of the expression matrix. Provide as TSV, CSV or RDS."/> <param name="gene_annotation_format" type="select" label="Format of gene annotation"> <option value="rds" selected="true">RDS</option> <option value="tsv">TSV</option> |
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| diff -r 75340a5e5fb0 -r a34f243f55a4 monocle3-macros.xml --- a/monocle3-macros.xml Mon Sep 16 09:52:55 2019 -0400 +++ b/monocle3-macros.xml Wed Jan 29 10:40:25 2020 -0500 |
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| @@ -1,9 +1,11 @@ <macros> - <token name="@TOOL_VERSION@">0.1.2</token> + <token name="@TOOL_VERSION@">0.1.3</token> <token name="@HELP@">More information can be found at https://cole-trapnell-lab.github.io/monocle3/ and https://github.com/ebi-gene-expression-group/monocle-scripts</token> <token name="@VERSION_HISTORY@"><![CDATA[ **Version history** +0.1.3+galaxy0: Updated to monocle3-cli 0.0.5 to fix bug with tsv inputs. + 0.1.2+galaxy0: Initial version based on monocle3-cli 0.0.3 and monocle3 0.1.2 ]]></token> <token name="@INPUT_OPTS@"> @@ -23,7 +25,7 @@ <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.3">monocle3-cli</requirement> + <requirement type="package" version="0.0.5">monocle3-cli</requirement> <yield/> </requirements> </xml> @@ -57,7 +59,7 @@ </param> <param name="introspective" argument="--introspective" type="boolean" checked="true" label="Print introspective information of output object"/> </xml> - + <xml name="verbose_flag"> <param name="verbose" argument="--verbose" type="boolean" checked="false" label="Emit verbose output"/> </xml> |