| Previous changeset 4:bc08158abf77 (2017-06-08) Next changeset 6:2c7df0077d28 (2019-02-22) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db commit d4b5497065b853ed094aebc9e4185e9995c5e0e0 |
|
modified:
customProDB.R test-data/hg19_genomic_mapping.sqlite test-data/hg19_variant_annotation.rdata |
| b |
| diff -r bc08158abf77 -r a3a66063d460 customProDB.R --- a/customProDB.R Thu Jun 08 11:06:13 2017 -0400 +++ b/customProDB.R Wed Nov 01 19:33:53 2017 -0400 |
| b |
| @@ -100,9 +100,9 @@ file.symlink(bai_file, paste(bamLink, ".bai", sep="")) # load customProDB from GitHub (NOTE: downloading the zip is faster than cloning the repo with git2r or devtools::install_github) - download.file("https://github.com/chambm/customProDB/archive/c57e5498392197bc598a18c26acb70d7530a921c.zip", "customProDB.zip", quiet=TRUE) + download.file("https://github.com/chambm/customProDB/archive/9db2223ef9932e50124b92d1bc49206af1f40fb3.zip", "customProDB.zip", quiet=TRUE) unzip("customProDB.zip") - devtools::load_all("customProDB-c57e5498392197bc598a18c26acb70d7530a921c") + devtools::load_all("customProDB-9db2223ef9932e50124b92d1bc49206af1f40fb3") easyRun(bamFile=bamLink, vcfFile=vcf_file, annotation_path=getwd(), rpkm_cutoff=rpkmCutoff, outfile_path=".", outfile_name="output", |
| b |
| diff -r bc08158abf77 -r a3a66063d460 test-data/hg19_genomic_mapping.sqlite |
| b |
| Binary file test-data/hg19_genomic_mapping.sqlite has changed |
| b |
| diff -r bc08158abf77 -r a3a66063d460 test-data/hg19_variant_annotation.rdata |
| b |
| Binary file test-data/hg19_variant_annotation.rdata has changed |