| Previous changeset 18:6c22795e1be0 (2022-11-18) Next changeset 20:1d660ee0b1c8 (2022-12-03) |
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Commit message:
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/lotus2 commit 3d69a14f20c8088412cf3729814be721b0db778c |
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modified:
lotus2.xml |
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added:
test-data/Arabidopsis_R1.fastqsanger.gz test-data/Arabidopsis_R2.fastqsanger.gz |
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| diff -r 6c22795e1be0 -r a3d31a68f291 lotus2.xml --- a/lotus2.xml Fri Nov 18 08:55:22 2022 +0000 +++ b/lotus2.xml Mon Nov 21 11:49:15 2022 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="lotus2" name="LotuS2" version="@VERSION@+galaxy1" profile="20.09"> +<tool id="lotus2" name="LotuS2" version="@VERSION@+galaxy2" profile="20.09"> <description>fast OTU processing pipeline</description> <macros> <token name="@VERSION@">2.21</token> @@ -305,7 +305,7 @@ <param argument="-keepUnclassified" type="boolean" truevalue="1" falsevalue="0" checked="true" label="Keep unclassified OTUs" help="Includes unclassified OTUs (i.e. no match in RDP/Blast database) in OTU and taxa abundance matrix calculations" /> <param argument="-LCA_cover" type="float" min="0" max="1" value="" optional="true" label="Minimum horizontal coverage of an OTU sequence against ref DB (optional)"/> <param argument="-LCA_frac" type="float" min="0" max="1" value="" optional="true" label="Minimum fraction of reads with identical taxonomy (optional)"/> - <param argument="-lulu" type="boolean" truevalue="1" falsevalue="0" checked="true" label="Use LULU to merge OTUs based on their occurrence" /> + <param argument="-lulu" type="boolean" truevalue="1" falsevalue="0" checked="false" label="Use LULU to merge OTUs based on their occurrence" /> <param argument="-buildPhylo" type="select" label="Build OTU phylogeny"> <option value="0">Disable</option> <option value="1" selected="true">Use fasttree2</option> |
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| diff -r 6c22795e1be0 -r a3d31a68f291 test-data/Arabidopsis_R1.fastqsanger.gz |
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| Binary file test-data/Arabidopsis_R1.fastqsanger.gz has changed |
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| diff -r 6c22795e1be0 -r a3d31a68f291 test-data/Arabidopsis_R2.fastqsanger.gz |
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| Binary file test-data/Arabidopsis_R2.fastqsanger.gz has changed |