| Previous changeset 12:27e7da5f6848 (2017-04-07) Next changeset 14:4c757d1ba7b4 (2018-02-13) |
|
Commit message:
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4897a06ef248e2e74e57a496dd68adbda3c828f1 |
|
modified:
macros.xml xcms_summary.r |
| b |
| diff -r 27e7da5f6848 -r a5347d57899f macros.xml --- a/macros.xml Fri Apr 07 07:37:23 2017 -0400 +++ b/macros.xml Wed Nov 29 09:47:38 2017 -0500 |
| b |
| @@ -19,7 +19,7 @@ </xml> <token name="@COMMAND_XCMS_SCRIPT@"> - LANG=C Rscript $__tool_directory__/xcms.r + LC_ALL=C Rscript $__tool_directory__/xcms.r </token> <token name="@COMMAND_LOG_EXIT@"> |
| b |
| diff -r 27e7da5f6848 -r a5347d57899f xcms_summary.r --- a/xcms_summary.r Fri Apr 07 07:37:23 2017 -0400 +++ b/xcms_summary.r Wed Nov 29 09:47:38 2017 -0500 |
| b |
| @@ -98,8 +98,8 @@ md5sumHeaderHtml = paste("<th>md5sum<sup>*</sup></th><th>md5sum<sup>**</sup> after bad characters removal</th>") md5sumHtml = paste("<td>",md5sumList$origin,"</td><td>",md5sumList$removalBadCharacters,"</td>") md5sumLegend = "<br/><sup>*</sup>The program md5sum is designed to verify data integrity. So you can check if the data were uploaded correctly or if the data were changed during the process.<br/><sup>**</sup>Because some bad characters (eg: accent) were removed from your original file, the checksum have changed too.<br/>" - } - + } + writehtml("<tr>",sampleNameHeaderHtml,"<th>filename</th>",md5sumHeaderHtml,"</tr>") writehtml(paste("<tr>",sampleNameHtml,"<td>",xset@filepaths,"</td>",md5sumHtml,"</tr>")) |