| Previous changeset 21:b9a31a60c708 (2012-12-03) Next changeset 23:75c35e2a0862 (2012-12-03) |
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Commit message:
Uploaded |
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added:
bsmap_meth_caller.sh |
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| diff -r b9a31a60c708 -r a55691c07823 bsmap_meth_caller.sh --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bsmap_meth_caller.sh Mon Dec 03 02:42:04 2012 -0500 |
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| @@ -0,0 +1,32 @@ +#!/bin/bash +# +# Galaxy wrapper for BSMAP Methylation Caller +# + +set -e + +#get parameters + +until [ $# -eq 0 ] +do + case $1 in + input=*) + input=${1#input=} + ;; + method=*) + method=${1#method=} + ;; + output=*) + output=${1#output=} + ;; + tempdir=*) + tempdir=${1#tempdir=} + ;; + ref=*) + ref=${1#ref=} + ;; + esac + shift +done + +methratio.py -o $output -d $ref -q $input \ No newline at end of file |