| Previous changeset 15:a207166bbeb2 (2016-04-19) Next changeset 17:3c5dd2c0ecf1 (2016-04-20) |
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Commit message:
planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit 4f055a2cf9a8ae7e9cc4d7982193c06df8df1fd1-dirty |
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modified:
tool_dependencies.xml |
| b |
| diff -r a207166bbeb2 -r a5c03de9ede7 tool_dependencies.xml --- a/tool_dependencies.xml Tue Apr 19 17:23:47 2016 -0400 +++ b/tool_dependencies.xml Wed Apr 20 16:29:49 2016 -0400 |
| b |
| b'@@ -1,24 +1,21 @@\n <?xml version="1.0"?>\n <tool_dependency>\n- <package name="libcurl" version="7.35">\n- <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n- </package>\n- <package name="R" version="3.2.1">\n- <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n- </package>\n- <package name="r-getopt" version="1.20.0">\n- <repository changeset_revision="712cb82311a8" name="package_r_3_2_1_getopt_1_20_0" owner="bebatut" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n- </package>\n- <package name="minfi" version="1.16.0">\n- <install version="1.0">\n- <actions>\n- <action type="setup_r_environment">\n- <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">\n- <package name="libcurl" version="7.35" />\n- </repository>\n- <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">\n- <package name="R" version="3.2.1" />\n- </repository>\n+ <package name="libcurl" version="7.35">\n+ <repository changeset_revision="f8230c44d76c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:8008" />\n+ </package>\n+ <package name="R" version="3.2.1">\n+ <repository changeset_revision="7289a736da57" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:8008" />\n+ </package>\n+ <package name="minfi" version="1.16.0">\n+ <install version="1.0">\n+ <actions>\n+ <action type="setup_r_environment">\n+ <repository changeset_revision="f8230c44d76c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:8008">\n+ <package name="libcurl" version="7.35" />\n+ </repository>\n+ <repository changeset_revision="7289a736da57" name="package_r_3_2_1" owner="iuc" toolshed="http://gaius.bx.psu.edu:8008">\n+ <package name="R" version="3.2.1" />\n+ </repository>\n <package>https://bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.16.1.tar.gz</package>\n <package>https://bioarchive.galaxyproject.org/Biobase_2.29.1.tar.gz</package>\n <package>http://bioconductor.org/packages/release/bioc/src/contrib/S4Vectors_0.8.11.tar.gz</package>\n@@ -28,30 +25,30 @@\n <package>https://bioarchive.galaxyproject.org/XVector_0.10.0.tar.gz</package>\n <package>https://bioconductor.org/packages/release/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz</package>\n <package>https://bioarchive.galaxyproject.org/Biostrings_2.38.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/iterators_1.0.8.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/foreach_1.4.3.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/locfit_1.5-9.1.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/matrixStats/matrixStats_0.14.2.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/iterators_1.0.8.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/foreach_1.4.3.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/locfit_1.5-9.1.tar.gz</package>\n+ '..b'contrib/reshape2_1.4.1.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/gtable_0.2.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/scales_0.4.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/ggplot2_2.1.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/rgl_0.95.1441.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/ellipse_0.3-8.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/corpcor_1.6.8.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/cluster_2.0.4.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/gridBase_0.4-7.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/doParallel_1.0.10.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/NMF_0.20.6.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/irlba_2.0.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/igraph_1.0.1.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/mixOmics_5.2.0.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/colorspace_1.2-6.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/dichromat_2.0-0.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/labeling_0.3.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/munsell_0.4.3.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/reshape2_1.4.1.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/gtable_0.2.0.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/scales_0.4.0.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/ggplot2_2.1.0.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/rgl_0.95.1441.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/ellipse_0.3-8.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/corpcor_1.6.8.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/cluster_2.0.4.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/gridBase_0.4-7.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/doParallel_1.0.10.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/NMF_0.20.6.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/irlba_2.0.0.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/igraph_1.0.1.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/mixOmics_5.2.0.tar.gz</package>\n <package>https://bioarchive.galaxyproject.org/minfi_1.16.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package>\n+ <package>https://depot.galaxyproject.org/package/noarch/getopt_1.20.0.tar.gz</package>\n <package>https://bioconductor.org/packages/release/data/experiment/src/contrib/FlowSorted.Blood.450k_1.8.0.tar.gz</package>\n </action>\n- </actions>\n- </install>\n- <readme />\n- </package>\n-</tool_dependency>\n+ </actions>\n+ </install>\n+ <readme>\n+ </readme>\n+ </package>\n+</tool_dependency>\n\\ No newline at end of file\n' |