| Previous changeset 2:f5653ed90dfd (2018-03-26) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfgenotypes commit 36e9065027cc7bf721e9d203208477ee88906c57" |
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modified:
macros.xml test-data/vcfgenotypes-test1.tab vcfgenotypes.xml |
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| diff -r f5653ed90dfd -r a60ae8af21a1 macros.xml --- a/macros.xml Mon Mar 26 12:26:49 2018 -0400 +++ b/macros.xml Thu Jan 23 08:09:14 2020 -0500 |
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| @@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.0.0_rc1">vcflib</requirement> + <requirement type="package" version="1.0.0_rc3">vcflib</requirement> <yield/> </requirements> </xml> @@ -10,10 +10,10 @@ <exit_code range="1:" level="fatal" /> </stdio> </xml> - <token name="@WRAPPER_VERSION@">1.0.0_rc1</token> - <xml name="citations"> - <citations> - <citation type="bibtex"> + <token name="@WRAPPER_VERSION@">1.0.0_rc3</token> + <xml name="citations"> + <citations> + <citation type="bibtex"> @misc{Garrison2015, author = {Garrison, Erik}, year = {2015}, @@ -22,8 +22,8 @@ journal = {GitHub repository}, url = {https://github.com/ekg/vcflib}, } - </citation> - </citations> - </xml> + </citation> + </citations> + </xml> <token name="@IS_PART_OF_VCFLIB@">is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).</token> </macros> |
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| diff -r f5653ed90dfd -r a60ae8af21a1 test-data/vcfgenotypes-test1.tab --- a/test-data/vcfgenotypes-test1.tab Mon Mar 26 12:26:49 2018 -0400 +++ b/test-data/vcfgenotypes-test1.tab Thu Jan 23 08:09:14 2020 -0500 |
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| @@ -1,9 +1,9 @@ 19 111 A C A,C NA00001:A/A NA00002:A/A NA00003:A/C 19 112 A G A,G NA00001:A/A NA00002:A/A NA00003:A/G -20 14370 G A G,A NA00001:G/G NA00002:A/G NA00003:A/A +20 14370 G A G,A NA00001:G/G NA00002:G/A NA00003:A/A 20 17330 T A T,A NA00001:T/T NA00002:T/A NA00003:T/T -20 1110696 A G,T A,G,T NA00001:G/T NA00002:T/G NA00003:T/T +20 1110696 A G,T A,G,T NA00001:G/T NA00002:G/T NA00003:T/T 20 1230237 T . T,. NA00001:T/T NA00002:T/T NA00003:T/T 20 1234567 G GA,GAC G,GA,GAC NA00001:G/GA NA00002:G/GAC NA00003:GA/GA -20 1235237 T . T,. NA00001:T/T NA00002:T/T NA00003:T/T +20 1235237 T . T,. NA00001:T/T NA00002:T/T NA00003:./. X 10 AC A,ATG AC,A,ATG NA00001:AC NA00002:AC/A NA00003:AC/ATG |
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| diff -r f5653ed90dfd -r a60ae8af21a1 vcfgenotypes.xml --- a/vcfgenotypes.xml Mon Mar 26 12:26:49 2018 -0400 +++ b/vcfgenotypes.xml Thu Jan 23 08:09:14 2020 -0500 |
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| @@ -5,7 +5,7 @@ </macros> <expand macro="requirements"/> <expand macro="stdio" /> - <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command> + <command>vcfgenotypes '${vcf_input}' > '${out_file1}'</command> <inputs> <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/> </inputs> |