| Previous changeset 23:1bdfe0d48de8 (2017-07-10) Next changeset 25:b2a0cc48c838 (2017-07-10) |
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Commit message:
Deleted selected files |
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removed:
GRsetFromGEO.xml |
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| diff -r 1bdfe0d48de8 -r a64925e33444 GRsetFromGEO.xml --- a/GRsetFromGEO.xml Mon Jul 10 08:58:11 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,18 +0,0 @@ -<tool id="getGRset" name="GRsetFromGEO"> - <description>downloads data from GEO</description> - <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.RData</command> - <inputs> - <param format="text" name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> - </inputs> - <outputs> - <data format="RDdata" name="output" label="output.RData" /> - </outputs> - <help> - **What it does** - This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object - **Input** - The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'" - **Output** - GenomicRatioSet object - </help> -</tool> |