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Commit message:
"planemo upload for repository https://github.com/davebx/bioext-gx/ commit 0c2133318563cdb508cb5561e95c9066bc17345f" |
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modified:
bam2msa.xml |
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| diff -r b226e0c805a5 -r a68cb16fa1a0 bam2msa.xml --- a/bam2msa.xml Fri Aug 20 21:03:56 2021 +0000 +++ b/bam2msa.xml Sat Sep 25 18:52:53 2021 +0000 |
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| @@ -7,11 +7,14 @@ </macros> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ + ## avoid bam2msa to create .bai in inputdir + ln -s '$input' input_bam && + ln -s '$input.metadata.bam_index' input_bam.bai && bam2msa #if $region_start and $region_end: -r $region_start:$region_end #end if - '$input' '$output' + 'input_bam' '$output' ]]></command> <inputs> <param name="input" type="data" format="bam,sam" label="Input BAM file"/> |