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Commit message:
Uploaded |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r a6c82a5d0b51 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Feb 17 21:40:19 2015 -0500 |
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| @@ -0,0 +1,17 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="samtools-fpic" version="0.1.19"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.19/samtools-0.1.19.tar.bz2</action> + <action type="shell_command">sed -i 's/O2/O2 -fPIC/' Makefile</action> + <action type="shell_command">make</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + <environment_variable name="SAMTOOLS" action="set_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme>Compiling samtools with fPIC in order to create bam.h and compiled libbam.a files</readme> + </package> +</tool_dependency> |