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Commit message:
Initial upload - velvet will compile with 4 categories and maxkmer of 191 |
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added:
tool_dependencies.xml |
| b |
| diff -r 000000000000 -r a6d81014257d tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Jun 28 17:27:47 2016 -0400 |
| b |
| @@ -0,0 +1,28 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="velvet" version="1.2.10"> + <install version="1.0"> + <actions> + <action type="shell_command">git clone git://github.com/dzerbino/velvet.git</action> + <action type="shell_command">git reset --hard 9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3</action> + <action type="shell_command">make -i CATEGORIES=4 MAXKMERLENGTH=191 OPENMP=1</action> + <action type="move_file"> + <source>velvetg</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>velveth</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/velveth</action> + <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/velvetg</action> + </actions> + </install> + <readme> + Installs velvet version 1.2.10. + </readme> + </package> +</tool_dependency> |