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Commit message:
Upload ctat tools. |
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added:
ctat_discasm.xml test-data/DISCASM/SF1/SF_out_aligned.bam test-data/DISCASM/SF1/SF_out_chimeric.junction test-data/DISCASM/SF1/reads.left.simPE.fq test-data/DISCASM/SF1/reads.right.simPE.fq test-data/DISCASM/SF2/Aligned.sortedByCoord.out.bam test-data/DISCASM/SF2/Chimeric.out.junction test-data/DISCASM/SF2/reads_1.fq.gz test-data/DISCASM/SF2/reads_2.fq.gz test-data/DISCASM/reads.simPE.oases.transcripts.fa test-data/DISCASM/reads_1_2.oases.transcripts.fa |
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| diff -r 000000000000 -r a772e555b5a1 ctat_discasm.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ctat_discasm.xml Tue Jul 17 11:49:52 2018 -0400 |
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| @@ -0,0 +1,62 @@ +<tool id="ctat_discasm" name="ctat_discasm" version="1.0.0" profile="17.05"> + <description>Discordant and Unmapped Read De novo Transcriptome Assembly</description> + <requirements> + <requirement type="package" version="0.1.3">discasm</requirement> + </requirements> + <command detect_errors="default"> + DISCASM + --aligned_bam $bam + --chimeric_junctions $chimeric + --left_fq $left_input + --right_fq $right_input + --denovo_assembler OasesMultiK + --out_dir "subdir" + </command> + <stdio> + <exit_code range="1:" level="fatal" description="Error returned from pipeline" /> + </stdio> + <regex match="Must investigate error above." + source="stderr" + level="fatal" + description="Unknown error encountered" /> + <inputs> + <param format="bam" name="bam" type="data" label="Aligned bam" help="Aligned Bam from Star Fusion tool"/> + <param format="tabular" name="chimeric" type="data" label="Chimeric.out.junction" help="Chimeric junction from Star Fusion tool"/> + <param format="fastq" name="left_input" type="data" label="Left/Forward strand reads" help="Forward strand reads"/> + <param format="fastq" name="right_input" type="data" label="Right/Reverse strand reads" help="Reverse strand reads"/> + </inputs> + <outputs> + <data format="fasta" name="oases.transcripts" label="${tool.name} on ${on_string}: Oasis Transcripts" from_work_dir="subdir/oasesMultiK_out_dir/oases.transcripts.fa" /> + </outputs> + + <tests> + <test> + <!-- The aligned and chimeric I got off of the website don't work with these reads_[1|2].fq.gz inputs. + These aligned and chimeric were created when I ran the StarFusion test on these inputs. + --> + <param name="left_input" value="DISCASM/SF2/reads_1.fq.gz" /> + <param name="right_input" value="DISCASM/SF2/reads_2.fq.gz" /> + <param name="bam" value="DISCASM/SF2/Aligned.sortedByCoord.out.bam" /> + <param name="chimeric" value="DISCASM/SF2/Chimeric.out.junction" /> + <output name="oases.transcripts" file="DISCASM/reads_1_2.oases.transcripts.fa" /> + </test> + <test> + <!-- The Aligned and Chimeric came from a StarFusion test on the reads.[left|right].simPE.fq inputs. + --> + <param name="left_input" value="DISCASM/SF1/reads.left.simPE.fq" /> + <param name="right_input" value="DISCASM/SF1/reads.right.simPE.fq" /> + <param name="bam" value="DISCASM/SF1/SF_out_aligned.bam" /> + <param name="chimeric" value="DISCASM/SF1/SF_out_chimeric.junction" /> + <output name="oases.transcripts" file="DISCASM/reads.simPE.oases.transcripts.fa" /> + </test> + </tests> + <help> +.. class:: infomark + +DISCASM is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). DISCASM aims to extract reads that map to reference genomes in a discordant fashion and optionally include reads that do not map to the genome at all, and perform a de novo transcriptome assembly of these reads. DISCASM relies on the output from STAR (as run via STAR-Fusion), and supports de novo transcriptome assembly using Trinity or Oases. Please read more here_. + +.. _here: https://github.com/DISCASM/DISCASM/wiki + </help> + <cite> + </cite> +</tool> |
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| diff -r 000000000000 -r a772e555b5a1 test-data/DISCASM/SF1/SF_out_aligned.bam |
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| Binary file test-data/DISCASM/SF1/SF_out_aligned.bam has changed |
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| diff -r 000000000000 -r a772e555b5a1 test-data/DISCASM/SF1/SF_out_chimeric.junction --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/DISCASM/SF1/SF_out_chimeric.junction Tue Jul 17 11:49:52 2018 -0400 |
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| b'@@ -0,0 +1,14692 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| diff -r 000000000000 -r a772e555b5a1 test-data/DISCASM/SF1/reads.left.simPE.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/DISCASM/SF1/reads.left.simPE.fq Tue Jul 17 11:49:52 2018 -0400 |
| b |
| b'@@ -0,0 +1,226068 @@\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap226-1/1\n+GGGCGGCGGGCGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap227-1/1\n+GGCGGCGGGCGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAAT\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap228-1/1\n+GCGGCGGGCGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap229-1/1\n+CGGCGGGCGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap230-1/1\n+GGCGGGCGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap231-1/1\n+GCGGGCGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap232-1/1\n+CGGGCGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap233-1/1\n+GGGCGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGGC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap234-1/1\n+GGCGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGGCT\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap235-1/1\n+GCGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGGCTT\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap236-1/1\n+CGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGGCTTG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap237-1/1\n+GGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGGCTTGC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap238-1/1\n+GGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGGCTTGCG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap239-1/1\n+GGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGGCTTGCGG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap240-1/1\n+GCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGGCTTGCGGC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap241-1/1\n+CGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGGCTTGCGGCC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap242-1/1\n+GGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGGCTTGCGGCCG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap243-1/1\n+GCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCGGCAGGCTGCGGTAAATCCGGGCTTGCGGCCGC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n'..b'198B|ENSG00000182796.8_Bp1831/1\n+CAGGGAGTGACCCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1832/1\n+AGGGAGTGACCCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1833/1\n+GGGAGTGACCCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1834/1\n+GGAGTGACCCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1835/1\n+GAGTGACCCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1836/1\n+AGTGACCCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1837/1\n+GTGACCCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1838/1\n+TGACCCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCCT\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1839/1\n+GACCCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCCTG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1840/1\n+ACCCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCCTGT\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1841/1\n+CCCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCCTGTC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1842/1\n+CCACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCCTGTCA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1843/1\n+CACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCCTGTCAG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1844/1\n+ACTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCCTGTCAGC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1845/1\n+CTGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCCTGTCAGCC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1846/1\n+TGGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCCTGTCAGCCA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1847/1\n+GGGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCCTGTCAGCCAG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1848/1\n+GGCCTCATTGCCTACCTCAGCCACTTCCACAGTGCCTTCAAGAGCATGGCCCACAGCCCAGGCCCTGTCAGCCAGG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n' |
| b |
| diff -r 000000000000 -r a772e555b5a1 test-data/DISCASM/SF1/reads.right.simPE.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/DISCASM/SF1/reads.right.simPE.fq Tue Jul 17 11:49:52 2018 -0400 |
| b |
| b'@@ -0,0 +1,226068 @@\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap226-1/2\n+GACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGACAGGTAGAGCA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap227-1/2\n+GGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGACAGGTAGAGC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap228-1/2\n+GGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGACAGGTAGAG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap229-1/2\n+GGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGACAGGTAGA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap230-1/2\n+TGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGACAGGTAG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap231-1/2\n+GTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGACAGGTA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap232-1/2\n+CGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGACAGGT\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap233-1/2\n+CCGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGACAGG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap234-1/2\n+ACCGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGACAG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap235-1/2\n+GACCGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGACA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap236-1/2\n+GGACCGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGAC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap237-1/2\n+CGGACCGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCGA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap238-1/2\n+ACGGACCGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGCG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap239-1/2\n+CACGGACCGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAGC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap240-1/2\n+CCACGGACCGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCAG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap241-1/2\n+TCCACGGACCGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGCA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap242-1/2\n+GTCCACGGACCGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAGC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@B3GNT1|ENSG00000174684.6--NPSR1|ENSG00000187258.9_Ap243-1/2\n+GGTCCACGGACCGTGGGGACGGGGGAAAGAACTCAAAATATTGGTCTTGCTCCTCCTGCCCGTGCAGTCCGGACAG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n'..b'198B|ENSG00000182796.8_Bp1831/2\n+ACCAGCATCCTCTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1832/2\n+CCAGCATCCTCTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCAC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1833/2\n+CAGCATCCTCTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACT\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1834/2\n+AGCATCCTCTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1835/2\n+GCATCCTCTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1836/2\n+CATCCTCTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1837/2\n+ATCCTCTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1838/2\n+TCCTCTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAGG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1839/2\n+CCTCTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAGGT\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1840/2\n+CTCTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAGGTC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1841/2\n+TCTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAGGTCC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1842/2\n+CTGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAGGTCCC\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1843/2\n+TGCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAGGTCCCT\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1844/2\n+GCATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAGGTCCCTG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1845/2\n+CATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAGGTCCCTGG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1846/2\n+ATTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAGGTCCCTGGG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1847/2\n+TTTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAGGTCCCTGGGG\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n+@MICAL1|ENSG00000135596.13--TMEM198B|ENSG00000182796.8_Bp1848/2\n+TTTCCTTGGCCCGGGATCGCTGCAGGGTCCTCTGAAGTTTACTAAGGAATAATACAGCACTGGAGGTCCCTGGGGA\n++\n+CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\n' |
| b |
| diff -r 000000000000 -r a772e555b5a1 test-data/DISCASM/SF2/Aligned.sortedByCoord.out.bam |
| b |
| Binary file test-data/DISCASM/SF2/Aligned.sortedByCoord.out.bam has changed |
| b |
| diff -r 000000000000 -r a772e555b5a1 test-data/DISCASM/SF2/Chimeric.out.junction --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/DISCASM/SF2/Chimeric.out.junction Tue Jul 17 11:49:52 2018 -0400 |
| b |
| b'@@ -0,0 +1,2364 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| diff -r 000000000000 -r a772e555b5a1 test-data/DISCASM/SF2/reads_1.fq.gz |
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| Binary file test-data/DISCASM/SF2/reads_1.fq.gz has changed |
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| diff -r 000000000000 -r a772e555b5a1 test-data/DISCASM/SF2/reads_2.fq.gz |
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| Binary file test-data/DISCASM/SF2/reads_2.fq.gz has changed |
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| diff -r 000000000000 -r a772e555b5a1 test-data/DISCASM/reads.simPE.oases.transcripts.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/DISCASM/reads.simPE.oases.transcripts.fa Tue Jul 17 11:49:52 2018 -0400 |
| b |
| b'@@ -0,0 +1,740 @@\n+>Locus_1_Transcript_1/1_Confidence_0.000_Length_2267\n+GGCGGCGGGCGGGGCGGCGCTCGGGGCTCGGCTGGCCTCGGCTCGCCTCGGCTGCGCTCG\n+GCAGGCTGCGGTAAATCCGGGCTTGCGGCCGCTGGCGTAGTCTGTGGCCGGGTGGTCGTT\n+GCTGCGCGCCCCGAGCCCCGAGAGCCATGCAGATGTCCTACGCCATCCGGTGCGCCTTCT\n+ACCAGCTGCTGCTGGCCGCGCTCATGCTGGTGGCGATGCTGCAGCTGCTCTACCTGTCGC\n+TGCTGTCCGGACTGCACGGGCAGGAGGAGCAAGACCAATATTTTGAGTTCTTTCCCCCGT\n+CCCCACGGTCCGTGGACCAGGTCAAGGCGCAGCTCCGCACCGCGCTGGCCTCTGGAGGCG\n+TCCTGGACGCTAGCGGCGATTACCGCGTCTACAGGGGCCTGCTGAAGACCACCATGGACC\n+CCAACGATGTGATCCTGGCCACGCACGCCAGCGTGGACAACCTGCTGCACCTGTCGGGTC\n+TGCTGGAGCGCTGGGAGGGCCCGCTGTCCGTGTCGGTGTTCGCGGCCACCAAGGAGGAGG\n+CGCAGCTGGCCACGGTGCTGGCCTACGCGCTGAGCAGCCACTGCCCCGACATGCGCGCCA\n+GGGTCGCCATGCACCTCGTGTGCCCCTCGCGTTACGAGGCAGCCGTGCCCGACCCCCGGG\n+AGCCGGGGGAGTTTGCCCTGCTGCGGTCCTGCCAGGAGGTCTTTGACAAGCTAGCCAGGG\n+TGGCCCAGCCCGGGATTAATTATGCGCTGGGCACCAATGTCTCCTACCCCAATAACCTGC\n+TGAGGAATCTGGCTCGTGAGGGGGCCAACTATGCCCTGGTGATCGATGTGGACATGGTGC\n+CCAGCGAGGGGCTGTGGAGAGGCCTGCGGGAAATGCTGGATCAGAGCAACCAGTGGGGAG\n+GCACCGCGCTGGTGGTGCCTGCCTTCGAAATCCGAAGAGCCCGCCGCATGCCCATGAACA\n+AAAACGAGCTGGTGCAGCTCTACCAGGTTGGCGAGGTGCGGCCCTTCTATTATGGGTTGT\n+GCACCCCCTGCCAGGCACCCACCAACTATTCCCGCTGGGTCAACCTGCCGGAAGAGAGCT\n+TGCTGCGGCCCGCCTACGTGGTACCTTGGCAGGACCCCTGGGAGCCATTCTACGTGGCAG\n+GAGGCAAGGTGCCCACCTTCGACGAGCGCTTTCGGCAGTACGGCTTCAACCGAATCAGCC\n+AGATTCTTTCACAGGACTGGTCAACATCTTGACAGATATTAATTGGCGATTCACTGGAGA\n+CTTCACGGCACCTGACCTGGTTTGCCGAGTGGTCCGCTATTTGCAGAAAAGCAAGCCAGG\n+GTCCTCATTGTGATCGCCTGGAGCCTGTCTTTTCTGTTCTCCATTCCCACCCTGATCATA\n+TTTGGGAAGAGGACACTGTCCAACGGTGAAGTGCAGTGCTGGGCCCTGTGGCCTGACGAC\n+TCCTACTGGACCCCATACATGACCATCGTGGCCTTCCTGGTGTACTTCATCCCTCTGACA\n+ATCATCAGCATCATGTATGGCATTGTGATCCGAACTATTTGGATTAAAAGCAAAACCTAC\n+GAAACAGTGATTTCCAACTGCTCAGATGGGAAACTGTGCAGCAGCTATAACCGAGGACTC\n+ATCTCAAAGGCAAAAATCAAGGCTATCAAGTATAGCATCATCATCATTCTTGCCTTCATC\n+TGCTGTTGGAGTCCATACTTCCTGTTTGACATTTTGGACAATTTCAACCTCCTTCCAGAC\n+ACCCAGGAGCGTTTCTATGCCTCTGTGATCATTCAGAACCTGCCAGCATTGAATAGTGCC\n+ATCAACCCCCTCATCTACTGTGTCTTCAGCAGCTCCATCTCTTTCCCCTGCAGGGAGCAA\n+AGATCACAGGATTCCAGAATGACGTTCCGGGAGAGAACTGAGAGGCATGAGATGCAGATT\n+CTGTCCAAGCCAGAATTCATCTAGACCCTAGGGCAGTGCCAGTGCTAGGCTGAGCACCAT\n+CAGCTCTCCCAGGTCCTTGTCACCTGCTTGGGCACGTGCATGGAACCCGAGCCAACTTCA\n+CCCCACCCTCGTCATTACCTGGGAGATGCACAAGACAAATGTTCTAATGACTGCATGCAC\n+TGCTTAAGTATTGGCCAACACGAACTCCCCAGTTATTCATGCCAGCCAGGAAGGAAACGC\n+CTTCCTTCCCCACCATTCCCAGCCCTCCTTCCCACTGGCCAGCACCTGAACCCAGTGAAC\n+ACAGGCATTAGTGGTCCAGGGTCCTGGCTTGGAGCCAGTGAGTAGAC\n+>Locus_2_Transcript_1/1_Confidence_0.000_Length_1681\n+AGCGGCGGCCCAGGAGGCAGCCGGTGAGCGCCTGCGAGCAGAGTGGCGGGGGCCGCTGAC\n+AGGTCCCGCGCAGCCCAGCCCAGCCCAGCCACGCGGCTCACAGGTGGGGTCCAAGAGCAG\n+TTTGGAGCAACCCGGCGCTACGGAGAGGGGTGGACGGCTCTGCACGGGCCTCCTGTCTCC\n+CGCTCGGGCAGAGGGACTCGGGGGGACCTCGCTCCTTGGCTGAGAGAACCTGAACTCGGG\n+CGGAGAGAACGCGCCCAGGCGGGCAAGGGGACCAGAGAAAGCCGGGGCTGGAAGTCACTG\n+TCGCTCGCCACTGTCTGGAGCGCACGGAGCGCAGAGGCCCGGCAGCCGCGCGTGCCCTCA\n+CGGGGACCGAGCCAGTGATGCAGGATCGCTGAGCGGAGATCCGCGCCGAGAAGTCTCTCG\n+GGGCCGGGGCTGAGACGCACGCCTTCGACACCGCTGCCAAGACCCCGATTCCGGCGACTC\n+TTGCGGGGAACCGAGGGGCCAAGGCTGCCCCAAGCTCAGGACTTGGGCGAGTCTAAGACG\n+ATGGTTTCTTAAGCACGGACCCGCGTTCCCCTTCCCGCTCCCTCGACTGGAGGCAGGGAT\n+CCTGCGCGGGGCCCCCGGGATTCCGTTTCCCCGCGGAGCCCCGGCCGCTGCCTCCCGGGA\n+CAGTTCGCACGGCCACAGGGGCGCACGGCGATGTGGCCTCCGTCCAGCGCGCTGGCCCGC\n+CGGGGGGATGCTCTGGCACCTGTCGGGGTCCAGGCCTAGCATGGCCGGCGCGTTGCCCGA\n+CGTCGCCTCCGGCTAGGATGGCCCCTCCGGGCCCGGCCAGTGCCCTCTCCACCTCGGCCG\n+AGCCGCTGTCCCGCAGCATCTTCCGGAAGTTCTTGCTGATGCTCTGCTCCCTGCTCACGT\n+CCCTTTACGTCTTCTACTGCCTGGCCGAGCGCTGCCAGACCCTGTCCGGCCCCGTCGTGG\n+GGCTGTCCGGCGGCGGCGAGGAGGCGGGGGCCCCTGGTGGCGGCGTCCTGGCCGGAGGCC\n+CGAGGGAGCTGGCGGTGTGGCCGGCGGCGGCACAGAGAAAGCGCCTCCTGCAACTGCCGC\n+AGTGGCGGAGGCGCCGGCCGCCCGCGCCCCGCGACGACGGCGAGGAGGCGGCCTGGGAAG\n+AAGAGTCCCCTGGCCTGTCAGGGGGTCCGGGCGGCTCCGGGGCCGGAAGCACCGTGGCCG\n+AGGCCCCGCCGGGGACCCTGGCGCTGCTCCTGGACGAAGGCAGCAAGCAGCTGCCGCAGG\n+CCATCATCATCGGAGTGAAGAAGGGCGGCACGCGGGCGCTGCTGGAGTTCCTGCGCGTGC\n+ACCCCGACGTGCGCGCCGTGGGCGCCGAGCCCCACTTCTTCGACCGCAGCTACGACAAGG\n+GCCTCGCCTGGTACCGGTCCACCTGGCCGGACAGGTAACCGGGGAAAGCCAGGACCAAAG\n+GGCAAAGCCGGGGCCATTGGGCGGGCTGGCCCCCGTGGCCC'..b'TCTTTGATCTACATGGAGGTTTCA\n+GAGTGTGCACATAAGCAAAAATTATTCACTGAGTTGTCAACTTAAAATCTGGAGAGTCAC\n+TGTATGTAAGTAAACCTAAAAACGCAAACTTAAAAAAAGAAACAAATTTCCACCTCTTCC\n+CTGTCTCCTGTTATTCCTATTACTGTCAACCATGGCATGTTCATTTCTATCCTGGCATAA\n+TATTATATTATTTGCTTGTATATTTGTAAATTGTATCTCCTGCTAGAATGTAAGCTGCAT\n+GAGGACAGATACTCTGTCTTGTCCACTGCTGCATCTTTCAGAGAATAGCATAGTGCCTGT\n+TACACAGTAGATACTTTAAAAAGAAGTGAATAAATAGATGGTTGGATGAATAAAAAGGTT\n+TGGATTTAATGAAGGGGAAAAAAAGAGGCAGAGGAGGTGAGCCTGAGGCTAGAACCGCTC\n+ACTCGACCCCCCACCCCCAGCCTACAGTTGTGGGGTCTTGCTCTGTAAGCCCAAGTCCAG\n+AAGCTTGTTCCCTGCCTGGAGGACCGCCGTGGCATGTCTATACCTCGTTGGGGTCATCCT\n+GGTCGGCATAGATT\n+>Locus_28_Transcript_1/1_Confidence_0.000_Length_202\n+AGCGCCGCGGACACCGGCACCGGCGCCACGGACTCCGCAGGACCCCGCGCCCGCCGCCGC\n+CGCTATGCTGGGGCTGCTGGTGGCGTTGCTGGCCCTGGGGCTCGCTGTCTTTGCGCTGCT\n+GGACGTCTGGTACCTGGTGCGCCTTCCGTGCGCCGTGCTGCGCGCGCGCCTGCTGCAGCC\n+GCGCGTCCGTGACCTGCTAGCT\n+>Locus_29_Transcript_1/1_Confidence_0.000_Length_170\n+CTCTGCCCCAACTGACAAGAACTGCCAAAGTCAACTATCTTGATTGCACTGCGTTTGGGG\n+TTACAAAGAAGGATATTTTCAGGTTTTAGATCACAGTGAATGATACTAAGTTCTGGAGTC\n+GCAAGGAAAAGCAGTGCAGTGCACATCTGTTGCGCAAACTTTCGTGTTAG\n+>Locus_30_Transcript_1/1_Confidence_0.000_Length_169\n+GCAGCACAGTTTCTTCAAGAAAACAGCTGATGAAGGTACAAATACAAGTAATAGTGTATC\n+TACAAGCCCCGCCATGGAGCAGTCTCAGTCTTCGGGCACCACCTCCAGTACATCGTCAAG\n+CTCAGGTGCGTCAGCAATTTCCTGCTCCTCTTGGTTGGTCAGGCACTGA\n+>Locus_31_Transcript_1/1_Confidence_0.000_Length_478\n+GTTGGCTAATGCTATGGGGGTTTTTACCACAGTTGCCATTGTGGAAGAAATTATTTGGTA\n+CATTAATAAAAAAAGTTGGTAAAACATGGTTTTATACCTCAGTGTATAAGATGTGCAAGA\n+CAAATATGCTTATTTCCTTTTCTAGAATATAAGTGATATTATTTGCTTATGACACTAACA\n+CTATTAATGACAGGAGTCAATCAGCCTTTACAGCTATCAAAATATAATGAGATCCCAATG\n+ATGATTCTTTTTTACTTTGAATGTTAATTAGTTTGGGACTTTGATTGGCTGGCAAACATT\n+TTATCATTGTCAGAATTTAATTTAGATTTCAAAAATAGCTTACAGGATTTTAAACATGGT\n+GTGGTATTCTAAAGCCTTTTTTTTAAAAAAAGAGATCTTTTTGAGAGAAACAAATGAGGA\n+TTGTAAAGTTTGGGGACTTACCTCTGTAGCATTGTGAAAATAAACTTTGATTAAGCTG\n+>Locus_32_Transcript_1/1_Confidence_0.000_Length_347\n+AATGTCAAAGAGAAAACTTATATACTATTTCCCTTGAAATTTTAAACTATATTTTCTTTA\n+CAGGTATTTATAATATACCAATGCTTTTATCAAACAGAATTTTAAAGAGCATAATAAATT\n+ATATTAAAGAACCAAAAGTTTTCCTGAGAATAAGAAAGTTTCACCCAATAAAATATTTTT\n+GAAAGGCATGTTCCTCTGTCAATGAAAAAAAGTACATGTATGTGTTGTGATATTAAAAGT\n+GACATTTGTCTAATAGCCTAATACAACATGTAGCTGAGTTTAACATGTGTGGTCTTGGTA\n+TTCTTAAGGGAACTTCCACATTATACATTTGATGTATTGACCAGAAT\n+>Locus_33_Transcript_1/1_Confidence_0.000_Length_246\n+CAAGAATTAAAGGCATTCTTTTGGATTCTGTCCTTTAATAACTTTCAGAGGCTTCCAGCT\n+CAGTAAAGACACTGATCAAATCTTGGTAAAAATGGGCTCGTGTGCAGACTTTAGGTGATG\n+TTCTTCAGCAAATTCAACAGGCCAAAGGAGTGTTTGTCACTGACAGAGCTCTCACCACTC\n+ACTGGTTCTGTGCCAGTTTTCCATAGCCTCCTCTCCCAGCATCGTAGTCCTGCCGATACT\n+CATCCC\n+>Locus_34_Transcript_1/1_Confidence_0.000_Length_209\n+TTGTAGGAGAGCCTATTGGAGATCCCGAGGAACTAGTGGGAGCCCCACTGGCCTTGGTTC\n+CATTTGAGGCTACCCCAGGGTAGTGCAGAATGGCCACTGCTTTGCGATCTTTCACCGCAA\n+GGTTGGAGTAGGCCACGGAGCTCATCTCTTGGTTGGCATCCTCCTTCGCAGGTGAGGTGC\n+CACCCTTGACATCAAGTGCAGGCCTCGAC\n+>Locus_35_Transcript_1/1_Confidence_0.000_Length_208\n+GGCCCGTCTCTTTGTAAGTAACTTTATTTTTATTTACAACAGAATTGGTGGCTTTATTCC\n+TCCATCTTTAGGGACACTTGGCATTAGCAGCTAGATGGAAAGTCCGCAGTGAAGTCAAAC\n+TCATTCTGCCCCAGCCACAGCTCCGGAAGCTCATTGGCTCGGTCCAACCCCAGTTCCACC\n+ACCAGCGACATCAGCACTTCCTCATCCA\n+>Locus_36_Transcript_1/1_Confidence_0.000_Length_214\n+TTTCTGCCTCTTTCTCTTGCTCCTCCTAATCTGGAGTTGTTTAGCAATTTCAGTCAAATT\n+ACGGAGCTGGGGGTTCCTCCTGAAGCTCTTGTATGGAAAGCAAAAACGGCAGACAGGACA\n+GGGAAAGGTATCATCTAGATCCTTCCAGGATACACTGAGGCAGGAGCGACAGAAGTTGTG\n+CCCACAGTTGATGGTCACTGGGTCTTTCAAGTAC\n+>Locus_37_Transcript_1/1_Confidence_0.000_Length_213\n+TGAAACAGACCCATTTACCAGTTCCTTATCTTTCAGAATCTGATACTGAGCAGATTTTAA\n+GAGGTTCGGAATCTGTTCCAGTATAGAAATAAGGCCAAACGGCTTCTGTGAAACAATCGT\n+TAAAAGTATAGAGAATAGACCTATCATTCATATTATAAAAGGAAAGATCACCCAATTCAT\n+AGTCCAGAAAAATACCAATTTTACTGGGTTTTA\n+>Locus_38_Transcript_1/1_Confidence_0.000_Length_250\n+ACATTAGTAGCACGATTATTTTATTATATGCTTTATAAAAAAACAAACACCCAAAGACAT\n+ACAACACACCGCCCTCACCCCCCAGCGGCCATTAGGGAGGGGGCTTATACTTTTCCTAAT\n+GTAGATCTGGCCATCTTATAAAGCAGACCACATTATTTGTTTCCATATATACCTGTAGAT\n+ATTTCTCTCCCCTCAAATATTTATATCTCGACTAAAAAAAGGAGGTGCAAAGAGTATATA\n+AAGATAAATG\n' |
| b |
| diff -r 000000000000 -r a772e555b5a1 test-data/DISCASM/reads_1_2.oases.transcripts.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/DISCASM/reads_1_2.oases.transcripts.fa Tue Jul 17 11:49:52 2018 -0400 |
| b |
| b'@@ -0,0 +1,407 @@\n+>Locus_1_Transcript_1/1_Confidence_0.000_Length_106\n+GCCATCTTTTACTGCTGTTGGAACACCAGCTACTGTGACTACCCCTGCCAGCAAGCCCAC\n+TGGCCTGAGCACATGAAGTCCTGCACCCAGTCAGGAGAAGGAGCGC\n+>Locus_2_Transcript_1/2_Confidence_0.333_Length_1414\n+TCGGAAATGGTGAAGGGAGACTCGAAGTACTCTGAGGCTTGTAGGAGGGTAAAATAGAGA\n+CCCAGTAAAATTGTAATAAGCAGTGCTTGAATTATTTGGTTTCGGTTGTTTTCTATTAGA\n+CTATGGTGAGCTCAGGTGATTGATACTCCTGATGCGAGTAATACGGATGTGTTTAGGAGT\n+GGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGGGGGCCAGTGCCCTCCTAATTGG\n+GGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAACCCTGCGAAGAAAAAAATT\n+TCTGAGGTAATAAATAGGATTATCCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGG\n+TGGCCTTGGTATGTGCTTTCTCGTGTTACATCGCGCCATCATTGGTATATGGTTAGTGTG\n+TTGGTTAGTAGGCCTAGTATGAGGAGCGTTATGGAGTGGAAGTGAAATCACATGGCTAGG\n+CCGGAGGTCATTAGGAGGGCTGAGAGGGCCCCTGTTAGGGGTCATGGGCTGGGTTTTACT\n+ATATGATAGGCATGTGATTGGTGGGTCATTATGTGTTGTCGTGCAGGTAGAGGCTTACTA\n+GAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAA\n+TTAGAATTGTGAAGATGATAAGTGTAGAGGGAAGGTTAATGGTTGATATTGCTAGGGTGG\n+CGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGG\n+CCAGGGCTATTGGTTGAATGAGTAGGCTGATGGTTTCGATAATAACTAGTATGGGGATAA\n+GGGGTGTAGGTGTGCCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAA\n+AGCCTATAATCACTGCGCCCGCTCATAAGGGGATGGCCATGGCTAGGTTTATAGATAGTT\n+GGGTGGTTGGTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAAA\n+TGATTAAGGATACTAGTATAAGAGATCAGGTTCGTCCTTTAGTGTTGTGTATGGTTATCA\n+TTTGTTTTGAGGTTAGTTTGATTAGTCATTGTTGGGTGGTGATTAGTCGGTTGTTGATGA\n+GATATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGTA\n+GGCCTAGGATTGTGGGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCA\n+GGGTTTGTTATAATTTTTTATTTTTATGGGCTTTGGTGAGGGAGGTAGGTGGTAGTTTGT\n+GTTTAATATTTTTAGTTGGGTGATGAGGAATAGTGTTTTCCCTCAACACTTTGATGGCCA\n+CTGGAATTTTCACATTCTCCCCATCAGGGATCCA\n+>Locus_2_Transcript_2/2_Confidence_0.000_Length_1407\n+TCGGAAATGGTGAAGGGAGACTCGAAGTACTCTGAGGCTTGTAGGAGGGTAAAATAGAGA\n+CCCAGTAAAATTGTAATAAGCAGTGCTTGAATTATTTGGTTTCGGTTGTTTTCTATTAGA\n+CTATGGTGAGCTCAGGTGATTGATACTCCTGATGCGAGTAATACGGATGTGTTTAGGAGT\n+GGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGGGGGCCAGTGCCCTCCTAATTGG\n+GGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAACCCTGCGAAGAAAAAAATT\n+TCTGAGGTAATAAATAGGATTATCCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGG\n+TGGCCTTGGTATGTGCTTTCTCGTGTTACATCGCGCCATCATTGGTATATGGTTAGTGTG\n+TTGGTTAGTAGGCCTAGTATGAGGAGCGTTATGGAGTGGAAGTGAAATCACATGGCTAGG\n+CCGGAGGTCATTAGGAGGGCTGAGAGGGCCCCTGTTAGGGGTCATGGGCTGGGTTTTACT\n+ATATGATAGGCATGTGATTGGTGGGTCATTATGTGTTGTCGTGCAGGTAGAGGCTTACTA\n+GAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAA\n+TTAGAATTGTGAAGATGATAAGTGTAGAGGGAAGGTTAATGGTTGATATTGCTAGGGTGG\n+CGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGG\n+CCAGGGCTATTGGTTGAATGAGTAGGCTGATGGTTTCGATAATAACTAGTATGGGGATAA\n+GGGGTGTAGGTGTGCCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAA\n+AGCCTATAATCACTGCGCCCGCTCATAAGGGGATGGCCATGGCTAGGTTTATAGATAGTT\n+GGGTGGTTGGTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAAA\n+TGATTAAGGATACTAGTATAAGAGATCAGGTTCGTCCTTTAGTGTTGTGTATGGTTATCA\n+TTTGTTTTGAGGTTAGTTTGATTAGTCATTGTTGGGTGGTGATTAGTCGGTTGTTGATGA\n+GATATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGTA\n+GGCCTAGGATTGTGGGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCA\n+GGGTTTGTTATAATTTTTTATTTTTATGGGCTTTGGTGAGGGAGGTAGGTGGTAGTTTGT\n+GTTTAATATTTTTAGTTGGGTGATGAGGAATAGTGTAAGGAGTATGGGGGTAATTATGGT\n+GGGCCATACGGTAGTATTTAGTTGGGG\n+>Locus_3_Transcript_1/7_Confidence_0.364_Length_498\n+TAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCATGCCTGTGTTG\n+GGTTGACAGTGAGGGTAATAATGACTTGTTGGTTGATTGTAGATATTGGGCTGTTAATTG\n+TCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGCGGAGGAGAATGTTTTCATGTTACTT\n+ATACTAACATTAGTTCTTCTATAGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCA\n+GTTATATGTTTGGGATTTTTTAGGTAGTGGGTGTTGAGCTTGACTCTAGTCTGGCACGGT\n+GAAGAGACATGAGAGGTGTAGAATAAGTGGGAGGCCCCCGGCGCCCCCCCGGTGTCCCCG\n+CGAGGGGCCCGGGGCGGGGTCCGCCGGCCCTGCGGGCCGCCGGTGAAATACCACTACTCT\n+GATCGTTTTTTCACTGACCCGGTGAGGCGGGGGGGCGAGCCCCGAGGGGCTCTCGCTTCT\n+GGCGCCAAGCGCCCGGCC\n+>Locus_3_Transcript_2/7_Confidence_0.364_Length_476\n+CCTCCTCCGGCGGGTGTTGACGCGATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTG\n+AAGAAATTCAATGAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCC\n+AAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATGAACGA'..b'TGTGTTACATGATTGATGAAGTACTTGATTCCATCT\n+GCTGTGTAAGCTTCCTCCCACCCATAAGGTAAACCCTCGGTTTCCCCCTGAGCTTTCATC\n+CTGAAGGCGAGGAGAAGCTAGATCCGCCACAAAAGGATAAGCCCTTCCCCACCACTAACG\n+GAGGAAACAAGTTGGCTCGGGATCCCGGGACG\n+>Locus_28_Transcript_1/1_Confidence_0.000_Length_209\n+CACGCGTGAGACTTCTCCGCCGCAGACGCCGCCGCGATGCGCTACGTCGCCTCCTACCTG\n+CTGGCTGCCCTAGAGGGCAACTCCTCCCCCAGCGCCAAGGACATCAAGAAGATCTTGGAC\n+AGCGTGGGTATCGAGGCGGACGACGACCGGCTCAACAAGGTTATCAGTGAGCTGAATGGA\n+AAAAACATTGAAGACGTCATTGCCCAGGG\n+>Locus_29_Transcript_1/2_Confidence_0.667_Length_261\n+GCCGACCTCACGGATTTTTACCAACCACTCGCTTTCCCTGTGGCCTTGGCACACTGGCAT\n+GCTGGTCTAGGATCCTCTACGCACAACGCCTGCTCGCCTCCTCCGTGTGGTTGCCAAGCC\n+AAGCCGCCTGCTACCTTCATCACCAAATTGCACTCGCTCCTTCCTGGAATCCTTTTTCCT\n+AGCTTCACCACCAAATCGTTAGCGCTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGC\n+ACTGGCTCCTGGACTCTTTTC\n+>Locus_29_Transcript_2/2_Confidence_0.333_Length_234\n+TTCGCTTTCCCTGTGGCCTTGGCACACTGGCATGCTGGTCTAGGATCCTCTACGCACAAC\n+GCCTGCTCGCCTCCTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAA\n+TTGCACTCGCTCCTTCCTGGAATCCTTTTTCCTAGCTTCACCACCAAATCGTTAGCGCTC\n+CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTC\n+>Locus_30_Transcript_1/1_Confidence_0.000_Length_131\n+CTCCTAGGGAGAGGAGGGTGGATGGAATTAAGGGTGTTAGTCATGTTAGCTTGTTTCAGG\n+TGCGAGATAGTAGTAGGGTCGTGGTGCTGGAGTTTAAGTTGAGTAGTAGGAATGCGGTAG\n+TAGTTAGGATA\n+>Locus_31_Transcript_1/1_Confidence_0.000_Length_339\n+GGGTGTGAGCCCGGCCCGTGGCGGCCACGTCTCCCGGGAGATGCTGTGACGGACCCGCAC\n+GGGAGGAGCTCGCGCCTGGCCTGGCGACCCGGTGGACTCGGCCCGCGGCGGCGCGCTCAC\n+CCGCCCCGTTCAGATAAAGGCTGGTGGTGGGAGAATGCTATCGCTGCCCTGTTTCGGAGA\n+CACATTCCCGTCAGCTGGCTGATCCGCGCTACCCTGAGTGAGTCGGAAAACTTCGAAGCA\n+GCTGTTGGCAAGTTGGCCAAGACTCCCCTTATTGCTGATGTTTATTACATTGTTGGTGGC\n+ACGTCCCCCCGGGAGGGGGTGGTCATCACGAGGAACAGA\n+>Locus_32_Transcript_1/1_Confidence_0.000_Length_121\n+AGACCCTATGGAGCTTTAATTTATTAATGCAAGCAGTACCTAACAAACCCACAGGTCCTA\n+AACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTC\n+C\n+>Locus_33_Transcript_1/1_Confidence_0.000_Length_122\n+GGTCTTCTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTT\n+AAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCCCTATTTAAGGAAC\n+AA\n+>Locus_34_Transcript_1/1_Confidence_0.000_Length_159\n+GACCATGGCGGAGATGCGGCAGAGCCTGGAGCAGGAGCGGGACCGGCTCATCGCCGAGGT\n+GAAGAAGCAGCTGGAGTTGGAGAAGCAGCAGGCGGTGGATGAGACCAAGAAGAAGCAGTG\n+GTGCGCCAACTGCAAGAAGGAGGCCATCTTTTACTGCTG\n+>Locus_35_Transcript_1/1_Confidence_0.000_Length_184\n+TTCTCTGTTTCCAGCTGCATCTGGCATAGGGCACTCTCTGCCTGGGTCCGTTCTTCTTCC\n+CTCTGGGCCTGGATGGCCTCCATTTCTGTCTGCTGCTCCTTTAGCCTCATTTCCAGCTCC\n+ATTTTTTCCCTTTCTAAGCTCTCCAGAGCCTTTGCCAGCTCCTGCTGGTGCCAGGAGCGC\n+TCCT\n+>Locus_36_Transcript_1/1_Confidence_0.000_Length_125\n+TCCGAACCCCCTCATGATTCTCGATTTTGCTGATAATCTTGATGTTCTTTCCCTTCTCTC\n+CCAGGACCTTCCTAACTTCATGGACATCAGATGCCTTGCGGATGAATGACGCAAACACCA\n+TATCA\n+>Locus_37_Transcript_1/2_Confidence_0.333_Length_238\n+GGGACTTTGGAGTCTTGGTCAGGGGCTCACCTCCGTGTGAGGCATAATTCTGCCCACGCT\n+TTCTGCCTTCTGCTCCACAGTGTCCTCAGGGAAGTGCGCGAATGTCACGGGACTGTTCTC\n+TGTGGTTCCATAAGCAACCTTAGCTGCTGTACAAGCTCCGGACAGCTCACAGGATTCTCC\n+CCATGGTGAGCCACTTTTACATCACAAAGCTGTCCTGCAGGATCTAACTGCACTTCCA\n+>Locus_37_Transcript_2/2_Confidence_0.333_Length_187\n+GTCCACGCTTTCTGCCTTCTGCTCCACAGTGTCCTCAGGGAAGTGCGCGAATGTCACGGG\n+ACTGTTCTCTGTGGTTCCATAAGCAACCTTAGCTGCTGTACAAGCTCCGGACAGCTCACA\n+GGATTCTCCCCATGGTGAGCCACTTTTACATCACAAAGCTGTCCTGCAGGATCTAACTGC\n+ACTTCCA\n+>Locus_38_Transcript_1/2_Confidence_0.667_Length_156\n+AATGACCCACCAATCACAAAAAGTCATACCGTAGAAAAGATGGCGTGTTTCTTTATTTTG\n+AAGATAATGCAGGAGTCATAGTGAACAATAAAGGCGAGATGAAAGGTTCTGCCATTACAG\n+GACCAGTAGCAAAGGAGTGTGCAGACTTGTGGCCCA\n+>Locus_38_Transcript_2/2_Confidence_0.333_Length_145\n+CGACAACGAAAGTCATACCGTAGAAAAGATGGCGTGTTTCTTTATTTTGAAGATAATGCA\n+GGAGTCATAGTGAACAATAAAGGCGAGATGAAAGGTTCTGCCATTACAGGACCAGTAGCA\n+AAGGAGTGTGCAGACTTGTGGCCCA\n+>Locus_39_Transcript_1/2_Confidence_0.667_Length_102\n+ACTACCACCTACCTCCCTCACCTGCCCCTCTGTTCTCTCCCCTCACATCCTCCTGCCCAG\n+CTCCTCACATACCCACACATTCCAGGGCTGGGGTGAGCCTGA\n+>Locus_39_Transcript_2/2_Confidence_0.333_Length_115\n+TGGAATGGGAGACCTGTTGGCCTGTGGGCCTCACCTGCCCCTCTGTTCTCTCCCCTCACA\n+TCCTCCTGCCCAGCTCCTCACATACCCACACATTCCAGGGCTGGGGTGAGCCTGA\n' |