| Previous changeset 33:04fa42777df9 (2021-12-03) Next changeset 35:a5937157062f (2022-05-07) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freebayes commit be1c2e9e056710ef8b1110a121dc38c6e06dbbee" |
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modified:
freebayes.xml leftalign.xml macros.xml |
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| diff -r 04fa42777df9 -r a7c9782130e8 freebayes.xml --- a/freebayes.xml Fri Dec 03 22:27:40 2021 +0000 +++ b/freebayes.xml Mon Feb 21 09:53:39 2022 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="freebayes" name="FreeBayes" version="@TOOL_VERSION@+galaxy1"> +<tool id="freebayes" name="FreeBayes" version="@TOOL_VERSION@+galaxy0"> <description>bayesian genetic variant detector</description> <xrefs> <xref type="bio.tools">freebayes</xref> @@ -8,8 +8,9 @@ </macros> <expand macro="requirements"> <requirement type="package" version="5.1.0">gawk</requirement> - <requirement type="package" version="20211022">parallel</requirement> + <requirement type="package" version="20211222">parallel</requirement> </expand> + <expand macro="version_command" /> <command detect_errors="exit_code"><![CDATA[ ##set up input files @@ -696,7 +697,7 @@ <param name="ref_file" ftype="fasta" value="freebayes-phix174.fasta"/> <param name="input_bams" ftype="cram" value="freebayes-phix174.cram"/> <param name="options_type_selector" value="simple"/> - <output name="output_vcf" file="freebayes-phix174-test1.vcf" lines_diff="4" /> + <output name="output_vcf" file="freebayes-phix174-test1.vcf" lines_diff="6" /> </test> </tests> <help><![CDATA[ |
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| diff -r 04fa42777df9 -r a7c9782130e8 leftalign.xml --- a/leftalign.xml Fri Dec 03 22:27:40 2021 +0000 +++ b/leftalign.xml Mon Feb 21 09:53:39 2022 +0000 |
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| @@ -8,6 +8,7 @@ <import>macros.xml</import> </macros> <expand macro="requirements" /> + <expand macro="version_command" /> <command detect_errors="exit_code"><![CDATA[ ##set up input files #set $reference_fasta_filename = "localref.fa" |
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| diff -r 04fa42777df9 -r a7c9782130e8 macros.xml --- a/macros.xml Fri Dec 03 22:27:40 2021 +0000 +++ b/macros.xml Mon Feb 21 09:53:39 2022 +0000 |
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| @@ -1,12 +1,15 @@ <macros> - <token name="@TOOL_VERSION@">1.3.5</token> + <token name="@TOOL_VERSION@">1.3.6</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">freebayes</requirement> - <requirement type="package" version="1.12">samtools</requirement> + <requirement type="package" version="1.14">samtools</requirement> <yield /> </requirements> </xml> + <xml name="version_command"> + <version_command>freebayes --version | cut -d v -f 3</version_command> + </xml> <xml name="citations"> <citations> <citation type="bibtex"> |