| Previous changeset 0:fcb4d9f67e75 (2019-02-07) Next changeset 2:435f1b59e064 (2019-02-08) |
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Commit message:
planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/socru commit 1024f378b83203ab9c365a7d386981ad257ce1d1-dirty |
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modified:
socru.xml |
| b |
| diff -r fcb4d9f67e75 -r a7ccd6b0788e socru.xml --- a/socru.xml Thu Feb 07 12:21:46 2019 -0500 +++ b/socru.xml Thu Feb 07 16:43:41 2019 -0500 |
| [ |
| @@ -6,6 +6,10 @@ <expand macro="requirements" /> <expand macro="version_command" /> <command detect_errors="exit_code"><![CDATA[ + + #set $_input_file = "'{}'".format($assembly.element_identifier) + ln -s '${assembly}' ${_input_file} && + socru --threads \${GALAXY_SLOTS:-4} @@ -13,7 +17,7 @@ --top_blast_hits top_blast_hits.tsv #if str($opt_args.max_bases_from_ends) != "" - --max_bases_from_ends $max_bases_from_ends + --max_bases_from_ends $$opt_args.max_bases_from_ends #end if --not_circular $opt_args.not_circular @@ -23,7 +27,7 @@ #if $opt_args.verbose $opt_args.verbose #end if - $species $assembly + $species ${_input_file} > $output ]]></command> |