| Previous changeset 8:d120504e741a (2019-03-04) Next changeset 10:a74785cdf5e3 (2019-03-04) |
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Commit message:
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit 593a4002db3f2513974809a94db514c05fa589f6-dirty |
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modified:
kraken2.xml macros.xml |
| b |
| diff -r d120504e741a -r a811afe91eab kraken2.xml --- a/kraken2.xml Mon Mar 04 17:17:43 2019 -0500 +++ b/kraken2.xml Mon Mar 04 17:21:42 2019 -0500 |
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| @@ -9,7 +9,7 @@ <version_command>kraken2 --version</version_command> <command detect_errors="exit_code"> <![CDATA[ - @SET_DATABASE_PATH@ + @SET_DATABASE_PATH@ && kraken2 --threads \${GALAXY_SLOTS:-1} --db '$kraken2_database' |
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| diff -r d120504e741a -r a811afe91eab macros.xml --- a/macros.xml Mon Mar 04 17:17:43 2019 -0500 +++ b/macros.xml Mon Mar 04 17:21:42 2019 -0500 |
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| @@ -15,4 +15,5 @@ <citation type="doi">10.1186/gb-2014-15-3-r46</citation> </citations> </xml> + <token name="@SET_DATABASE_PATH@">if [ -d '${kraken2_database.fields.path}/${kraken2_database.fields.name}' ]; then export KRAKEN2_DB_PATH='${kraken_database.fields.path}/${kraken_database.fields.name}'; else export KRAKEN2_DB_PATH='${kraken_database.fields.path}'; fi</token> </macros> |