| Previous changeset 0:394b13717223 (2013-10-01) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml |
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| diff -r 394b13717223 -r a8f40accd7ce tool_dependencies.xml --- a/tool_dependencies.xml Tue Oct 01 12:43:56 2013 -0400 +++ b/tool_dependencies.xml Fri Dec 19 10:30:57 2014 -0500 |
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| @@ -3,15 +3,15 @@ <package name="cufflinks" version="2.1.1"> <install version="1.0"> <actions_group> - <actions os="linux" architecture="x86_64"> - <action type="download_by_url">http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.1.1.Linux_x86_64.tar.gz</action> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.1.1.Linux_x86_64.tar.gz</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> </action> </actions> - <actions os="darwin" architecture="x86_64"> - <action type="download_by_url">http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.1.1.OSX_x86_64.tar.gz</action> + <actions architecture="x86_64" os="darwin"> + <action type="download_by_url">http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.1.1.OSX_x86_64.tar.gz</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> @@ -19,23 +19,23 @@ </actions> <actions> <package name="boost" version="1.53.0"> - <repository changeset_revision="dbdde1a2d0c5" name="package_boost_1_53" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu/" prior_installation_required="True" /> + <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="samtools" version="0.1.18"> - <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu/" prior_installation_required="True" /> + <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="eigen" version="3.2.0"> - <repository changeset_revision="c6204ba02233" name="package_eigen_3_2_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu/" prior_installation_required="True" /> + <repository changeset_revision="c6204ba02233" name="package_eigen_3_2_0" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <action type="download_by_url">http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.1.1.tar.gz</action> <action type="set_environment_for_install"> - <repository changeset_revision="dbdde1a2d0c5" name="package_boost_1_53" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu/" prior_installation_required="True"> + <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="boost" version="1.53.0" /> </repository> - <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu/" prior_installation_required="True"> + <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="samtools" version="0.1.18" /> </repository> - <repository changeset_revision="c6204ba02233" name="package_eigen_3_2_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu/" prior_installation_required="True"> + <repository changeset_revision="c6204ba02233" name="package_eigen_3_2_0" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="eigen" version="3.2.0" /> </repository> </action> @@ -43,10 +43,10 @@ <action type="shell_command">make && make install</action> </actions> <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action> </actions_group> </install> - <readme></readme> + <readme /> </package> </tool_dependency> |