| Previous changeset 1:a288b8869b7b (2016-01-19) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9' |
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modified:
tool_dependencies.xml |
| b |
| diff -r a288b8869b7b -r a8f485b2efd9 tool_dependencies.xml --- a/tool_dependencies.xml Tue Jan 19 06:56:53 2016 -0500 +++ b/tool_dependencies.xml Tue Jan 19 09:37:46 2016 -0500 |
| b |
| @@ -8,22 +8,27 @@ <action type="move_directory_files"> <source_directory>../FastQC</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> - <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action> + </action> + <action type="chmod"> + <file mode="755">$INSTALL_DIR/fastqc</file> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + <environment_variable name="FASTQC_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable> </action> </actions> <actions os="darwin" architecture="x86_64"> <action type="download_by_url" sha256sum="bd4089397cfa1086d81e7b29508542d2478917df8d1ef1fb494616da1b8e651a">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_darwin_all.dmg</action> <action type="shell_command"> - hdiutil attach fastqc_v0.11.4.dmg && + hdiutil attach fastqc_0.11.4_darwin_all.dmg && cp -R /Volumes/FastQC/FastQC.app $INSTALL_DIR && hdiutil detach /Volumes/FastQC </action> - <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/FastQC.app/Contents/MacOS</environment_variable> + <environment_variable name="FASTQC_JAR_PATH" action="set_to">$INSTALL_DIR/FastQC.app/Contents/MacOS</environment_variable> + </action> </actions> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> - <environment_variable name="FASTQC_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable> - </action> </actions_group> </install> </package> |