Repository 't_coffee'
hg clone https://toolshed.g2.bx.psu.edu/repos/earlhaminst/t_coffee

Changeset 5:a91be6005274 (2017-03-28)
Previous changeset 4:fa59d6fea7f5 (2017-03-03) Next changeset 6:c67bd5acbae2 (2018-04-25)
Commit message:
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee commit e33ecdc7a0addaf800a66d5f7bf9f6c9b26699a3
modified:
t_coffee.xml
b
diff -r fa59d6fea7f5 -r a91be6005274 t_coffee.xml
--- a/t_coffee.xml Fri Mar 03 07:29:32 2017 -0500
+++ b/t_coffee.xml Tue Mar 28 07:01:44 2017 -0400
[
@@ -12,8 +12,8 @@
     <command>
 <![CDATA[
         #if str($input_type.filter_fasta) == 'yes'
-            #set $input = '-infile=stdin'
-            python '$__tool_directory__/filter_by_fasta_ids.py' '$input_type.identifiers' '$input_type.fasta_input' |
+            #set $input = 'temp.fasta'
+            python '$__tool_directory__/filter_by_fasta_ids.py' '$input_type.identifiers' '$input_type.fasta_input' > temp.fasta &&
         #end if
 
         #set $method_opt = ''