| Previous changeset 2:1c9bca15e214 (2016-06-14) Next changeset 4:539f157784e7 (2017-04-08) |
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Commit message:
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/hardklor commit b4871f9659a924a68430aed3a93f4f9bad733fd6 |
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modified:
hardklor.xml kronik.xml test-data/kronik_result.kr |
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removed:
tool_dependencies.xml |
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| diff -r 1c9bca15e214 -r a979b9ff3272 hardklor.xml --- a/hardklor.xml Tue Jun 14 11:16:42 2016 -0400 +++ b/hardklor.xml Wed Dec 07 16:36:36 2016 -0500 |
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| @@ -1,7 +1,7 @@ -<tool id="hardklor" name="Hardklor" version="2.30"> +<tool id="hardklor" name="Hardklor" version="2.30.1"> <description>identification of features from mass spectra</description> <requirements> - <requirement type="package" version="2.30">hardklor</requirement> + <requirement type="package" version="2.3.0">hardklor</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal"/> |
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| diff -r 1c9bca15e214 -r a979b9ff3272 kronik.xml --- a/kronik.xml Tue Jun 14 11:16:42 2016 -0400 +++ b/kronik.xml Wed Dec 07 16:36:36 2016 -0500 |
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| @@ -1,7 +1,7 @@ -<tool id="kronik" name="Kronik" version="2.02"> +<tool id="kronik" name="Kronik" version="2.20"> <description>processes Hardklor features to find peptides by chromatographic profiling</description> <requirements> - <requirement type="package" version="2.02">kronik</requirement> + <requirement type="package" version="2.20">kronik</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal" description="Error occurred while running Kronik"/> |
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| diff -r 1c9bca15e214 -r a979b9ff3272 test-data/kronik_result.kr --- a/test-data/kronik_result.kr Tue Jun 14 11:16:42 2016 -0400 +++ b/test-data/kronik_result.kr Wed Dec 07 16:36:36 2016 -0500 |
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| @@ -1,14 +1,14 @@ First Scan Last Scan Num of Scans Charge Monoisotopic Mass Base Isotope Peak Best Intensity Summed Intensity First RTime Last RTime Best RTime Best Correlation Modifications -101 105 4 1 647.000900 648.008200 230778.000000 860284.000000 0.385700 0.404500 0.385700 0.974300 _ -101 105 4 1 609.178100 610.185400 197593.000000 712620.000000 0.385700 0.404500 0.404500 0.993100 _ -101 105 4 1 667.994300 669.001700 183122.000000 651082.000000 0.385700 0.404500 0.385700 0.952000 _ -101 105 4 1 683.197000 684.204300 177728.000000 628119.000000 0.385700 0.404500 0.391700 0.951200 _ -101 105 4 3 1109.920500 370.980800 148068.000000 487925.000000 0.385700 0.404500 0.385700 1.000000 _ -102 105 3 1 758.217100 759.224400 118842.000000 323534.000000 0.391700 0.404500 0.404500 0.960500 _ -101 105 4 1 685.195600 686.202900 89336.000000 289027.343750 0.385700 0.404500 0.404500 0.975400 _ -101 105 4 1 611.176300 612.183600 72749.000000 270190.000000 0.385700 0.404500 0.398500 0.999700 _ -101 105 4 1 619.878700 620.886000 72031.000000 218751.671875 0.385700 0.404500 0.404500 0.972600 _ -101 105 4 2 1390.722200 696.368400 69113.000000 236599.328125 0.385700 0.404500 0.398500 0.999700 _ -101 105 4 1 892.222800 893.230100 55772.000000 185033.000000 0.385700 0.404500 0.404500 0.956600 _ -101 104 3 1 820.199600 821.206900 39983.000000 101690.000000 0.385700 0.398500 0.385700 0.991900 _ -101 105 4 1 894.221400 895.228700 36689.000000 130505.000000 0.385700 0.404500 0.391700 0.980700 _ +101 105 4 1 647.000900 648.008200 230778.000000 860284.000000 0.385700 0.404500 0.385700 0.9743 _ +101 105 4 1 609.178100 610.185400 197593.000000 712620.000000 0.385700 0.404500 0.404500 0.9931 _ +101 105 4 1 667.994300 669.001700 183122.000000 651082.000000 0.385700 0.404500 0.385700 0.9520 _ +101 105 4 1 683.197000 684.204300 177728.000000 628119.000000 0.385700 0.404500 0.391700 0.9512 _ +101 105 4 3 1109.920500 370.980800 148068.000000 487925.000000 0.385700 0.404500 0.385700 1.0000 _ +102 105 3 1 758.217100 759.224400 118842.000000 323534.000000 0.391700 0.404500 0.404500 0.9605 _ +101 105 4 1 685.195600 686.202900 89336.000000 289027.343750 0.385700 0.404500 0.404500 0.9754 _ +101 105 4 1 611.176300 612.183600 72749.000000 270190.000000 0.385700 0.404500 0.398500 0.9997 _ +101 105 4 1 619.878700 620.886000 72031.000000 218751.671875 0.385700 0.404500 0.404500 0.9726 _ +101 105 4 2 1390.722200 696.368400 69113.000000 236599.328125 0.385700 0.404500 0.398500 0.9997 _ +101 105 4 1 892.222800 893.230100 55772.000000 185033.000000 0.385700 0.404500 0.404500 0.9566 _ +101 104 3 1 820.199600 821.206900 39983.000000 101690.000000 0.385700 0.398500 0.385700 0.9919 _ +101 105 4 1 894.221400 895.228700 36689.000000 130505.000000 0.385700 0.404500 0.391700 0.9807 _ |
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| diff -r 1c9bca15e214 -r a979b9ff3272 tool_dependencies.xml --- a/tool_dependencies.xml Tue Jun 14 11:16:42 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,9 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="hardklor" version="2.30"> - <repository changeset_revision="e25ed64d962b" name="package_hardklor_2_30" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="kronik" version="2.02"> - <repository changeset_revision="797b81fd9054" name="package_kronik_2_02" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency> |