| Previous changeset 6:bfae83dedd4c (2016-09-19) Next changeset 8:dc8efad9c31b (2016-09-19) |
|
Commit message:
Uploaded |
|
added:
IsoEM.loc.sample |
| b |
| diff -r bfae83dedd4c -r aa9875d90894 IsoEM.loc.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/IsoEM.loc.sample Mon Sep 19 22:09:12 2016 -0400 |
| b |
| @@ -0,0 +1,12 @@ +#This file has file paths for the GTF, cluster file and tmap and hisat2 indices for IsoEM2 + +#NOTE: All entries in this file MUST be tab-delimited + +#Every entry has the following 5 fields: +#Reference name <GTF> <TMAP_INDEX> <HISAT2_INDEX> <Cluster file> + + + +mm10-RefSeq77 /import1/GTF/mm10RefSeq77UCSCAug29-2016.gtf /import1/tmap-index/tmap3.4.1/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/hisat2-index/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/GTF/mm10RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt +hg38-RefSeq77 /import1/GTF/hg38RefSeq77UCSCAug29-2016.gtf /import1/tmap-index/tmap3.4.1/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/hisat2-index/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/GTF/hg38RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt + \ No newline at end of file |