| Previous changeset 3:bf1c3f9f8282 (2013-05-03) Next changeset 5:3d4f1fa26f0e (2014-12-16) |
|
Commit message:
Uploaded valid tools and complex repository dependency definition. |
|
modified:
rgPicardASMetrics.xml rgPicardGCBiasMetrics.xml tool_dependencies.xml |
| b |
| diff -r bf1c3f9f8282 -r ab1f60c26526 rgPicardASMetrics.xml --- a/rgPicardASMetrics.xml Fri May 03 17:13:01 2013 -0400 +++ b/rgPicardASMetrics.xml Fri Feb 21 12:07:49 2014 -0500 |
| b |
| @@ -26,7 +26,7 @@ <when value="default"> <param name="index" type="select" label="Check the assigned reference genome" help="Galaxy thinks that the reads in you dataset were aligned against this reference. If this is not correct, use the 'Select a build-in reference genome' option of the 'Select Reference Genome' dropdown to select approprtiate Reference."> <options from_data_table="all_fasta"> - <filter type="data_meta" ref="input_file" key="dbkey" column="dbkey" multiple="True" separator="," /> + <filter type="data_meta" ref="input_file" key="dbkey" column="1" multiple="True" separator="," /> <validator type="no_options" message="No reference build available for selected input" /> </options> </param> |
| b |
| diff -r bf1c3f9f8282 -r ab1f60c26526 rgPicardGCBiasMetrics.xml --- a/rgPicardGCBiasMetrics.xml Fri May 03 17:13:01 2013 -0400 +++ b/rgPicardGCBiasMetrics.xml Fri Feb 21 12:07:49 2014 -0500 |
| b |
| @@ -24,7 +24,7 @@ <when value="default"> <param name="index" type="select" label="Check the assigned reference genome" help="Galaxy thinks that the reads in you dataset were aligned against this reference. If this is not correct, use the 'Select a build-in reference genome' option of the 'Select Reference Genome' dropdown to select approprtiate Reference."> <options from_data_table="all_fasta"> - <filter type="data_meta" ref="input_file" key="dbkey" column="dbkey" multiple="True" separator=","/> + <filter type="data_meta" ref="input_file" key="dbkey" column="1" multiple="True" separator=","/> <validator type="no_options" message="No reference build available for the selected input data" /> </options> </param> |
| b |
| diff -r bf1c3f9f8282 -r ab1f60c26526 tool_dependencies.xml --- a/tool_dependencies.xml Fri May 03 17:13:01 2013 -0400 +++ b/tool_dependencies.xml Fri Feb 21 12:07:49 2014 -0500 |
| b |
| @@ -1,19 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="picard" version="1.56.0"> - <install version="1.0"> - <actions> - <action type="download_by_url">http://downloads.sourceforge.net/project/picard/picard-tools/1.56/picard-tools-1.56.zip</action> - <action type="move_directory_files"> - <source_directory>picard-tools-1.56</source_directory> - <destination_directory>$INSTALL_DIR/jars</destination_directory> - </action> - <action type="set_environment"> - <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable> - </action> - </actions> - </install> - <readme> - </readme> + <repository changeset_revision="61e41d21cb6f" name="package_picard_1_56_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |