| Previous changeset 2:05ca4081ca7e (2014-01-09) Next changeset 4:8176b2575aa1 (2014-03-27) |
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Commit message:
Fix for using built-in reference data. |
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modified:
sam_to_bam.py |
| b |
| diff -r 05ca4081ca7e -r ab4c4e07eb3c sam_to_bam.py --- a/sam_to_bam.py Thu Jan 09 14:29:01 2014 -0500 +++ b/sam_to_bam.py Fri Jan 17 16:30:43 2014 -0500 |
| b |
| @@ -48,7 +48,6 @@ # We're using locally cached reference sequences( e.g., /galaxy/data/equCab2/sam_index/equCab2.fa ). # The indexes for /galaxy/data/equCab2/sam_index/equCab2.fa will be contained in # a file named /galaxy/data/equCab2/sam_index/equCab2.fa.fai - fai_index_file_base = seq_path fai_index_file_path = '%s.fai' % options.index if not os.path.exists( fai_index_file_path ): #clean up temp files |