| Previous changeset 9:51d945eab1e1 (2021-04-12) Next changeset 11:c9cb76cf8d6c (2023-11-08) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 806c15e8f3ae7acea300ebeb83222162c42eca14" |
|
modified:
macros.xml normalize.xml |
| b |
| diff -r 51d945eab1e1 -r ab55fe8030b6 macros.xml --- a/macros.xml Mon Apr 12 18:18:24 2021 +0000 +++ b/macros.xml Wed Sep 22 21:12:45 2021 +0000 |
| b |
| @@ -10,6 +10,11 @@ <yield /> </requirements> </xml> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">scanpy</xref> + </xrefs> + </xml> <xml name="citations"> <citations> <citation type="doi">10.1186/s13059-017-1382-0</citation> |
| b |
| diff -r 51d945eab1e1 -r ab55fe8030b6 normalize.xml --- a/normalize.xml Mon Apr 12 18:18:24 2021 +0000 +++ b/normalize.xml Wed Sep 22 21:12:45 2021 +0000 |
| [ |
| @@ -1,5 +1,6 @@ <tool id="scanpy_normalize" name="Normalize" version="@galaxy_version@" profile="@profile@"> <description>with scanpy</description> + <expand macro="bio_tools"/> <macros> <import>macros.xml</import> </macros> @@ -168,7 +169,7 @@ <has_text_matching expression="log=True"/> </assert_contents> </output> - <output name="anndata_out" file="pp.recipe_zheng17.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frace="0.15"/> + <output name="anndata_out" file="pp.recipe_zheng17.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.15"/> </test> <test> <!-- test 2 --> @@ -214,7 +215,7 @@ <has_text_matching expression="log=True"/> </assert_contents> </output> - <output name="anndata_out" file="pp.recipe_seurat.recipe_zheng17.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frace="0.15"/> + <output name="anndata_out" file="pp.recipe_seurat.recipe_zheng17.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.25"/> </test> </tests> <help><![CDATA[ |