| Previous changeset 22:01bbba6d57ff (2020-03-30) Next changeset 24:512c2b701d96 (2021-07-02) |
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Commit message:
"planemo upload commit c1e276cf53b3c54d4702ab26d4f40a525a720998" |
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modified:
CAMERA_annotateDiffreport.r README.rst abims_CAMERA_annotateDiffreport.xml lib.r macros.xml repository_dependencies.xml test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.rules.variableMetadata.tsv test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv |
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added:
test-data/faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.RData |
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removed:
test-data/faahKO-single.xset.merged.group.retcor.group.fillpeaks-xcms3.RData test-data/faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix-xcms3.tsv test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata-xcms3.tsv test-data/faahKO.xset.group.retcor.group.fillpeaks.RData test-data/faahKO_reduce.zip |
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| diff -r 01bbba6d57ff -r abf1775ac14d CAMERA_annotateDiffreport.r --- a/CAMERA_annotateDiffreport.r Mon Mar 30 09:27:57 2020 -0400 +++ b/CAMERA_annotateDiffreport.r Thu Apr 22 10:27:38 2021 +0000 |
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| @@ -4,18 +4,20 @@ cat("\tSESSION INFO\n") #Import the different functions -source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } +source_local <- function(fname) { + argv <- commandArgs(trailingOnly = FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep = "/")) +} source_local("lib.r") -pkgs=c("CAMERA","multtest","batch") +pkgs <- c("CAMERA", "multtest", "batch") loadAndDisplayPackages(pkgs) cat("\n\n"); # ----- ARGUMENTS ----- cat("\tARGUMENTS INFO\n") -args = parseCommandArgs(evaluate=FALSE) #interpretation of arguments given in command line as an R list of objects -write.table(as.matrix(args), col.names=F, quote=F, sep='\t') +args <- parseCommandArgs(evaluate = FALSE) #interpretation of arguments given in command line as an R list of objects +write.table(as.matrix(args), col.names = F, quote = F, sep = "\t") cat("\n\n"); @@ -24,7 +26,7 @@ cat("\tINFILE PROCESSING INFO\n") #image is an .RData file necessary to use xset variable given by previous tools -load(args$image); args$image=NULL +load(args$image); args$image <- NULL cat("\n\n") @@ -33,21 +35,21 @@ cat("\tARGUMENTS PROCESSING INFO\n") # Save arguments to generate a report -if (!exists("listOFargs")) listOFargs=list() -listOFargs[[format(Sys.time(), "%y%m%d-%H:%M:%S_annotatediff")]] = args +if (!exists("listOFargs")) listOFargs <- list() +listOFargs[[format(Sys.time(), "%y%m%d-%H:%M:%S_annotatediff")]] <- args # We unzip automatically the chromatograms from the zip files. -if (!exists("zipfile")) zipfile=NULL -if (!exists("singlefile")) singlefile=NULL -rawFilePath = getRawfilePathFromArguments(singlefile, zipfile, args) -zipfile = rawFilePath$zipfile -singlefile = rawFilePath$singlefile -args = rawFilePath$args -directory = retrieveRawfileInTheWorkingDirectory(singlefile, zipfile) +if (!exists("zipfile")) zipfile <- NULL +if (!exists("singlefile")) singlefile <- NULL +rawFilePath <- getRawfilePathFromArguments(singlefile, zipfile, args) +zipfile <- rawFilePath$zipfile +singlefile <- rawFilePath$singlefile +args <- rawFilePath$args +directory <- retrieveRawfileInTheWorkingDir(singlefile, zipfile) # Because so far CAMERA isn't compatible with the new XCMSnExp object -if (exists("xdata")){ +if (exists("xdata")) { xset <- getxcmsSetObject(xdata) } @@ -57,10 +59,10 @@ # ----- PROCESSING INFO ----- cat("\tMAIN PROCESSING INFO\n") -results_list=annotatediff(xset=xset,args=args,variableMetadataOutput="variableMetadata.tsv") -xa=results_list$xa -diffrep=results_list$diffrep -variableMetadata=results_list$variableMetadata +results_list <- annotatediff(xset = xset, args = args, variableMetadataOutput = "variableMetadata.tsv") +xa <- results_list$xa +diffrep <- results_list$diffrep +variableMetadata <- results_list$variableMetadata cat("\n\n") @@ -71,8 +73,8 @@ cat("\n\n") #saving R data in .Rdata file to save the variables used in the present tool -objects2save = c("xa","variableMetadata","diffrep","cAnnot","listOFargs","zipfile","singlefile") -save(list=objects2save[objects2save %in% ls()], file="annotatediff.RData") +objects2save <- c("xa", "variableMetadata", "diffrep", "cAnnot", "listOFargs", "zipfile", "singlefile") +save(list = objects2save[objects2save %in% ls()], file = "annotatediff.RData") cat("\n\n") |
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| diff -r 01bbba6d57ff -r abf1775ac14d README.rst --- a/README.rst Mon Mar 30 09:27:57 2020 -0400 +++ b/README.rst Thu Apr 22 10:27:38 2021 +0000 |
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| @@ -2,6 +2,10 @@ Changelog/News -------------- +**Version 2.2.6+camera1.46.0 - 12/04/2021** + +- UPGRADE: upgrade the CAMERA version from 1.42.0 to 1.46.0 (see CAMERA News_) + **Version 2.2.6+camera1.42.0+galaxy1 - 09/03/2020** - BUGFIX: Fix the zip export of the pictures (eic and boxplot) |
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| diff -r 01bbba6d57ff -r abf1775ac14d abims_CAMERA_annotateDiffreport.xml --- a/abims_CAMERA_annotateDiffreport.xml Mon Mar 30 09:27:57 2020 -0400 +++ b/abims_CAMERA_annotateDiffreport.xml Thu Apr 22 10:27:38 2021 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.2.6+camera@TOOL_VERSION@-galaxy1"> +<tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.2.6+camera@TOOL_VERSION@-galaxy0"> <description>CAMERA annotate function. Returns annotation results (isotope peaks, adducts and fragments) and a diffreport if more than one condition.</description> @@ -205,29 +205,15 @@ </outputs> <tests> - <!--<test> - <param name="image" value="faahKO.xset.group.retcor.group.fillpeaks.RData"/> - <expand macro="test_annotate_diffreport"/> - <expand macro="test_annotate_quick_true"/> - <expand macro="test_file_load_zip"/> - <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" /> - </test>--> <test> - <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/> + <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.RData"/> <expand macro="test_annotate_diffreport"/> <expand macro="test_annotate_quick_true"/> <expand macro="test_file_load_single"/> <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" lines_diff="2" /> </test> <test> - <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks-xcms3.RData"/> - <expand macro="test_annotate_diffreport"/> - <expand macro="test_annotate_quick_true"/> - <expand macro="test_file_load_single"/> - <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata-xcms3.tsv" lines_diff="2" /> - </test> - <test> - <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/> + <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.RData"/> <expand macro="test_annotate_diffreport"/> <conditional name="quick_block"> <expand macro="test_annotate_quick_false" /> @@ -436,6 +422,8 @@ .. _News: https://bioconductor.org/packages/release/bioc/news/CAMERA/NEWS +@HELP_CAMERA_NEWVERSION_1460@ + **Version 2.2.6+camera1.42.0-galaxy1 - 09/03/2020** - BUGFIX: Fix the zip export of the pictures (eic and boxplot) |
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| diff -r 01bbba6d57ff -r abf1775ac14d lib.r --- a/lib.r Mon Mar 30 09:27:57 2020 -0400 +++ b/lib.r Thu Apr 22 10:27:38 2021 +0000 |
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| b'@@ -5,8 +5,8 @@\n parseCommandArgs <- function(...) {\n args <- batch::parseCommandArgs(...)\n for (key in names(args)) {\n- if (args[key] %in% c("TRUE","FALSE"))\n- args[key] = as.logical(args[key])\n+ if (args[key] %in% c("TRUE", "FALSE"))\n+ args[key] <- as.logical(args[key])\n }\n return(args)\n }\n@@ -16,14 +16,20 @@\n # - load the packages\n # - display the sessionInfo\n loadAndDisplayPackages <- function(pkgs) {\n- for(pkg in pkgs) suppressPackageStartupMessages( stopifnot( library(pkg, quietly=TRUE, logical.return=TRUE, character.only=TRUE)))\n+ for (pkg in pkgs) suppressPackageStartupMessages(stopifnot(library(pkg, quietly = TRUE, logical.return = TRUE, character.only = TRUE)))\n \n- sessioninfo = sessionInfo()\n- cat(sessioninfo$R.version$version.string,"\\n")\n+ sessioninfo <- sessionInfo()\n+ cat(sessioninfo$R.version$version.string, "\\n")\n cat("Main packages:\\n")\n- for (pkg in names(sessioninfo$otherPkgs)) { cat(paste(pkg,packageVersion(pkg)),"\\t") }; cat("\\n")\n+ for (pkg in names(sessioninfo$otherPkgs)) {\n+ cat(paste(pkg, packageVersion(pkg)), "\\t")\n+ }\n+ cat("\\n")\n cat("Other loaded packages:\\n")\n- for (pkg in names(sessioninfo$loadedOnly)) { cat(paste(pkg,packageVersion(pkg)),"\\t") }; cat("\\n")\n+ for (pkg in names(sessioninfo$loadedOnly)) {\n+ cat(paste(pkg, packageVersion(pkg)), "\\t")\n+ }\n+ cat("\\n")\n }\n \n # This function retrieve a xset like object\n@@ -31,18 +37,18 @@\n getxcmsSetObject <- function(xobject) {\n # XCMS 1.x\n if (class(xobject) == "xcmsSet")\n- return (xobject)\n+ return(xobject)\n # XCMS 3.x\n if (class(xobject) == "XCMSnExp") {\n # Get the legacy xcmsSet object\n- suppressWarnings(xset <- as(xobject, \'xcmsSet\'))\n+ suppressWarnings(xset <- as(xobject, "xcmsSet"))\n if (is.null(xset@phenoData$sample_group))\n- sampclass(xset) = "."\n+ sampclass(xset) <- "."\n else\n sampclass(xset) <- xset@phenoData$sample_group\n if (!is.null(xset@phenoData$sample_name))\n- rownames(xset@phenoData) = xset@phenoData$sample_name\n- return (xset)\n+ rownames(xset@phenoData) <- xset@phenoData$sample_name\n+ return(xset)\n }\n }\n \n@@ -51,138 +57,139 @@\n diffreport_png2pdf <- function(filebase) {\n dir.create("pdf")\n \n- pdfEicOutput = paste0("pdf/",filebase,"-eic_pdf.pdf")\n- pdfBoxOutput = paste0("pdf/",filebase,"-box_pdf.pdf")\n+ pdfEicOutput <- paste0("pdf/", filebase, "-eic_pdf.pdf")\n+ pdfBoxOutput <- paste0("pdf/", filebase, "-box_pdf.pdf")\n \n- system(paste0("gm convert ",filebase,"_eic/*.png ",pdfEicOutput))\n- system(paste0("gm convert ",filebase,"_box/*.png ",pdfBoxOutput))\n+ system(paste0("gm convert ", filebase, "_eic/*.png ", pdfEicOutput))\n+ system(paste0("gm convert ", filebase, "_box/*.png ", pdfBoxOutput))\n \n }\n \n #@author G. Le Corguille\n #The function create a zip archive from the different png generated by diffreport\n diffreport_png2zip <- function() {\n- zip("eic.zip", dir(pattern="_eic"), zip=Sys.which("zip"))\n- zip("box.zip", dir(pattern="_box"), zip=Sys.which("zip"))\n+ zip("eic.zip", dir(pattern = "_eic"), zip = Sys.which("zip"))\n+ zip("box.zip", dir(pattern = "_box"), zip = Sys.which("zip"))\n }\n \n #The function create a zip archive from the different tabular generated by diffreport\n diffreport_tabular2zip <- function() {\n- zip("tabular.zip", dir(pattern="tabular/*"), zip=Sys.which("zip"))\n+ zip("tabular.zip", dir(pattern = "tabular/*"), zip = Sys.which("zip"))\n }\n \n #@author G. Le Corguille\n #This function convert if it is required the Retention Time in minutes\n RTSecondToMinute <- function(variableMetadata, convertRTMinute) {\n- if (convertRTMinute){\n+ if (convertRTMinute) {\n #converting the retention times (seconds) into minutes\n print("converting the retention times into minutes in the variableMetadata")\n- v'..b'ath_i in seq_len(length(singlefile_galaxyPaths))) {\n+ singlefile_galaxyPath <- singlefile_galaxyPaths[singlefile_galaxyPath_i]\n+ singlefile_sampleName <- singlefile_sampleNames[singlefile_galaxyPath_i]\n+ singlefile[[singlefile_sampleName]] <- singlefile_galaxyPath\n }\n }\n for (argument in c("zipfile", "zipfilePositive", "zipfileNegative",\n "singlefile_galaxyPath", "singlefile_sampleName",\n "singlefile_galaxyPathPositive", "singlefile_sampleNamePositive",\n- "singlefile_galaxyPathNegative","singlefile_sampleNameNegative")) {\n- args[[argument]]=NULL\n+ "singlefile_galaxyPathNegative", "singlefile_sampleNameNegative")) {\n+ args[[argument]] <- NULL\n }\n- return(list(zipfile=zipfile, singlefile=singlefile, args=args))\n+ return(list(zipfile = zipfile, singlefile = singlefile, args = args))\n }\n \n \n # This function retrieve the raw file in the working directory\n # - if zipfile: unzip the file with its directory tree\n # - if singlefiles: set symlink with the good filename\n-retrieveRawfileInTheWorkingDirectory <- function(singlefile, zipfile) {\n- if(!is.null(singlefile) && (length("singlefile")>0)) {\n+retrieveRawfileInTheWorkingDir <- function(singlefile, zipfile) {\n+ if (!is.null(singlefile) && (length("singlefile") > 0)) {\n for (singlefile_sampleName in names(singlefile)) {\n- singlefile_galaxyPath = singlefile[[singlefile_sampleName]]\n- if(!file.exists(singlefile_galaxyPath)){\n- error_message=paste("Cannot access the sample:",singlefile_sampleName,"located:",singlefile_galaxyPath,". Please, contact your administrator ... if you have one!")\n+ singlefile_galaxyPath <- singlefile[[singlefile_sampleName]]\n+ if (!file.exists(singlefile_galaxyPath)) {\n+ error_message <- paste("Cannot access the sample:", singlefile_sampleName, "located:", singlefile_galaxyPath, ". Please, contact your administrator ... if you have one!")\n print(error_message); stop(error_message)\n }\n \n- file.symlink(singlefile_galaxyPath,singlefile_sampleName)\n+ file.symlink(singlefile_galaxyPath, singlefile_sampleName)\n }\n- directory = "."\n+ directory <- "."\n \n }\n- if(!is.null(zipfile) && (zipfile!="")) {\n- if(!file.exists(zipfile)){\n- error_message=paste("Cannot access the Zip file:",zipfile,". Please, contact your administrator ... if you have one!")\n+ if (!is.null(zipfile) && (zipfile != "")) {\n+ if (!file.exists(zipfile)) {\n+ error_message <- paste("Cannot access the Zip file:", zipfile, ". Please, contact your administrator ... if you have one!")\n print(error_message)\n stop(error_message)\n }\n \n- #list all file in the zip file\n- #zip_files=unzip(zipfile,list=T)[,"Name"]\n-\n #unzip\n- suppressWarnings(unzip(zipfile, unzip="unzip"))\n+ suppressWarnings(unzip(zipfile, unzip = "unzip"))\n \n #get the directory name\n- filesInZip=unzip(zipfile, list=T);\n- directories=unique(unlist(lapply(strsplit(filesInZip$Name,"/"), function(x) x[1])));\n- directories=directories[!(directories %in% c("__MACOSX")) & file.info(directories)$isdir]\n- directory = "."\n- if (length(directories) == 1) directory = directories\n+ filesInZip <- unzip(zipfile, list = T);\n+ directories <- unique(unlist(lapply(strsplit(filesInZip$Name, "/"), function(x) x[1])));\n+ directories <- directories[!(directories %in% c("__MACOSX")) & file.info(directories)$isdir]\n+ directory <- "."\n+ if (length(directories) == 1) directory <- directories\n \n- cat("files_root_directory\\t",directory,"\\n")\n+ cat("files_root_directory\\t", directory, "\\n")\n \n }\n- return (directory)\n+ return(directory)\n }\n-\n' |
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| diff -r 01bbba6d57ff -r abf1775ac14d macros.xml --- a/macros.xml Mon Mar 30 09:27:57 2020 -0400 +++ b/macros.xml Thu Apr 22 10:27:38 2021 +0000 |
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| @@ -1,14 +1,14 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">1.42.0</token> + <token name="@TOOL_VERSION@">1.46.0</token> <xml name="requirements"> <requirements> <requirement type="package" version="0.4_3">r-snow</requirement> <requirement type="package" version="@TOOL_VERSION@">bioconductor-camera</requirement> - <requirement type="package" version="2.42.0">bioconductor-multtest</requirement> + <requirement type="package" version="2.46.0">bioconductor-multtest</requirement> <requirement type="package" version="1.1_5">r-batch</requirement> - <requirement type="package" version="1.3.31">graphicsmagick</requirement> + <requirement type="package" version="1.3.35">graphicsmagick</requirement> </requirements> </xml> <xml name="stdio"> @@ -160,6 +160,12 @@ </token> + <token name="@HELP_CAMERA_NEWVERSION_1460@"> +**Version 2.2.6+camera1.46.0 - 12/04/2021** + +- UPGRADE: upgrade the CAMERA version from 1.42.0 to 1.46.0 (see CAMERA News_) + </token> + <token name="@HELP_CAMERA_NEWVERSION_1420@"> **Version 2.2.6+camera1.42.0 - 13/02/2020** |
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| diff -r 01bbba6d57ff -r abf1775ac14d repository_dependencies.xml --- a/repository_dependencies.xml Mon Mar 30 09:27:57 2020 -0400 +++ b/repository_dependencies.xml Thu Apr 22 10:27:38 2021 +0000 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0" ?> <repositories> - <repository changeset_revision="4a51ab3d8ecf" name="rdata_camera_datatypes" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu"/> - <repository changeset_revision="544f6d2329ac" name="rdata_xcms_datatypes" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu"/> + <repository name="rdata_camera_datatypes" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4a51ab3d8ecf"/> + <repository name="rdata_xcms_datatypes" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="544f6d2329ac"/> </repositories> \ No newline at end of file |
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| diff -r 01bbba6d57ff -r abf1775ac14d test-data/faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.RData |
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| diff -r 01bbba6d57ff -r abf1775ac14d test-data/faahKO-single.xset.merged.group.retcor.group.fillpeaks-xcms3.RData |
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| diff -r 01bbba6d57ff -r abf1775ac14d test-data/faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData |
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| diff -r 01bbba6d57ff -r abf1775ac14d test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix-xcms3.tsv --- a/test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix-xcms3.tsv Mon Mar 30 09:27:57 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,6333 +0,0 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|
| b |
| diff -r 01bbba6d57ff -r abf1775ac14d test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv --- a/test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv Mon Mar 30 09:27:57 2020 -0400 +++ b/test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv Thu Apr 22 10:27:38 2021 +0000 |
| b |
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|
| b |
| diff -r 01bbba6d57ff -r abf1775ac14d test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.rules.variableMetadata.tsv --- a/test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.rules.variableMetadata.tsv Mon Mar 30 09:27:57 2020 -0400 +++ b/test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.rules.variableMetadata.tsv Thu Apr 22 10:27:38 2021 +0000 |
| [ |
| b'@@ -1,8158 +1,8210 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555.006\t60\tInf\t-1\t0.5\n+M600T2840\tM600T47.3\t600\t600\t600\t47.3372629233573\t47.3372629233573\t47.3372629233573\t1\t0\t1\t1\t\t\t5894\tInf\t1\t0.5\n+M600T2539\tM600T42.3\t600\t600\t600\t42.3156781851637\t42.3156781851637\t42.3156781851637\t1\t1\t0\t1\t\t\t5920\t2.23053317990027\t-0.503401216747608\t0.682975551652556\n+M600T3077\tM600T51.3\t600\t600\t600\t51.283514849037\t51.283514849037\t51.283514849037\t1\t0\t1\t1\t\t[M+Cl]- 565.028\t48\t2.18147341521415\t0.49233075435208\t0.688471999299595\n+M600T3351\tM600T55.9\t600\t600\t600\t55.8500317012254\t55.8500317012254\t55.8500317012254\t1\t1\t0\t1\t\t[M+Cl]- 565.029 [M-H]- 601.011\t9\tInf\t-1\t0.5\n+M600T2967\tM600T49.5\t600\t600\t600\t49.4504846495809\t49.4504846495809\t49.4504846495809\t1\t1\t0\t1\t\t\t3382\t1.46600944388899\t-0.262600604339136\t0.820279867271764\n+M600T3213\tM600T53.6\t600\t600\t600\t53.55503925145\t53.55503925145\t53.55503925145\t1\t1\t0\t1\t\t[M+Cl]- 565.037\t112\tInf\t-1.97910446659152\t0.297850145833411\n' |
| b |
| diff -r 01bbba6d57ff -r abf1775ac14d test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata-xcms3.tsv --- a/test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata-xcms3.tsv Mon Mar 30 09:27:57 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,6333 +0,0 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|
| b |
| diff -r 01bbba6d57ff -r abf1775ac14d test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv --- a/test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv Mon Mar 30 09:27:57 2020 -0400 +++ b/test-data/faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv Thu Apr 22 10:27:38 2021 +0000 |
| b |
| b'@@ -1,8158 +1,8210 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| diff -r 01bbba6d57ff -r abf1775ac14d test-data/faahKO_reduce.zip |
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