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xls2tab.xml |
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| diff -r 09ebc5a5cdc3 -r ac37b65a50da xls2tab.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/xls2tab.xml Wed Dec 05 16:03:57 2018 -0500 |
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| @@ -0,0 +1,55 @@ +<tool id="xls2tab_R" name="XLS sheet to Tabular" version="0.1"> + <requirements> + <requirement type="package" version="3.2.1">R</requirement> + <requirement type="package" version="1.1.0">r-readxl</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + Rscript '$__tool_directory__/xlsx2tab.R' '$input1' '$sheet' '$output' ]]> + </command> + <inputs> + <param format="excel.xls" name="input1" type="data" label="XLS file"/> + <param name="sheet" type="text" label="Excel sheet name" value="biodiv_data"> + <sanitizer sanitize="False"/> + </param> + + </inputs> + + <outputs> + <data format="tabular" name="output" from_work_dir="out.tabular" /> + </outputs> + + <tests> + <test> + <param name="input1" value="example_csv.csv"/> + <param name="sheet" value=","/> + <output name="output" file="out.tabular"/> + </test> + </tests> + + <help> +**What it does** + +Extract a sheet from XLS file to a tabular file. + + +------ + +**Example** + +Input XLS with a sheet named 'données in situ' + +Output tabular + + +------ + +**Arguments** + +Input: xls file. +Excel sheet name: données in situ + + + + + </help> +</tool> |