| Previous changeset 23:08f5203ef8c1 (2019-04-09) Next changeset 25:acc66e5c23d7 (2020-02-12) |
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Commit message:
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a5136bfc124956893f4f0c91808d1c0d78c4ea01 |
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modified:
lib.r |
| b |
| diff -r 08f5203ef8c1 -r acc0a4a366c1 lib.r --- a/lib.r Tue Apr 09 12:24:11 2019 -0400 +++ b/lib.r Mon Apr 29 06:31:35 2019 -0400 |
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| @@ -333,7 +333,7 @@ files[exists] <- sub("//","/",files[exists]) # WHAT IS ON THE FILESYSTEM - filesystem_filepaths <- system(paste0("find \"$PWD/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T) + filesystem_filepaths <- system(paste0("find \"",getwd(),"/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T) filesystem_filepaths <- filesystem_filepaths[grep(filepattern, filesystem_filepaths, perl=T)] # COMPARISON |