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Commit message:
planemo upload commit 08f1831e097df5d74bf60ff5955e7e9c8e524cc8-dirty |
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modified:
README.rst cluster_profiler.xml |
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| diff -r a71792aa5a08 -r ad1244024bd8 README.rst --- a/README.rst Wed Mar 07 09:37:57 2018 -0500 +++ b/README.rst Wed Mar 14 12:40:35 2018 -0400 |
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| @@ -31,7 +31,7 @@ compared to a background (whole organism or user-defined list). **Input required** - + This component works with Gene ids (e.g : 4151, 7412) or Uniprot accession number (e.g. P31946). You can copy/paste these identifiers or supply a tabular file (.csv, .tsv, .txt, .tab) where there are contained. @@ -42,4 +42,11 @@ **User manual / Documentation** of the clusterProfiler R package (functions and parameters): https://bioconductor.org/packages/3.7/bioc/vignettes/clusterProfiler/inst/doc/clusterProfiler.html -(Very well explained) \ No newline at end of file +(Very well explained) + +**Reference** + +clusterProfiler R package reference : +G Yu, LG Wang, Y Han, QY He. clusterProfiler: an R package for comparing biological themes among gene clusters. +OMICS: A Journal of Integrative Biology 2012, 16(5):284-287. +doi:[10.1089/omi.2011.0118](http://dx.doi.org/10.1089/omi.2011.0118) |
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| diff -r a71792aa5a08 -r ad1244024bd8 cluster_profiler.xml --- a/cluster_profiler.xml Wed Mar 07 09:37:57 2018 -0500 +++ b/cluster_profiler.xml Wed Mar 14 12:40:35 2018 -0400 |
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| @@ -65,7 +65,7 @@ <when value="file" > <param name="file" type="data" format="txt,tabular" label="Choose a file that contains your list of IDs" help="" /> <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does your input file contain header?" /> - <param name="ncol" type="text" label="The column number of IDs to map" help='For example, fill in "c1" if it is the first column, "c2" if it is the second column and so on' /> + <param name="ncol" type="text" value="c1" label="The column number of IDs to map" help='For example, fill in "c1" if it is the first column, "c2" if it is the second column and so on' /> </when> </conditional> <conditional name="idti" > |