| Previous changeset 0:67e6c4455bb8 (2020-04-08) Next changeset 2:715b020ecfb6 (2020-04-27) |
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Commit message:
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed" |
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modified:
garnett_classify_cells.xml garnett_macros.xml |
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| diff -r 67e6c4455bb8 -r ad647e1d14dc garnett_classify_cells.xml --- a/garnett_classify_cells.xml Wed Apr 08 06:22:12 2020 -0400 +++ b/garnett_classify_cells.xml Fri Apr 24 11:22:06 2020 -0400 |
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| @@ -5,7 +5,17 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - garnett_classify_cells.R --cds-object '${cds_object}' --classifier-object '${classifier_object}' --database '${database}' --cds-gene-id-type '${cds_gene_id_type}' --cluster-extend '${cluster_extend}' --rank-prob-ratio '${rank_prob_ratio}' --cds-output-obj '${cds_output_obj}' + garnett_classify_cells.R --cds-object '${cds_object}' --classifier-object '${classifier_object}' --database '${database}' --cds-output-obj '${cds_output_obj}' + + #if $cds_gene_id_type + --cds-gene-id-type '${cds_gene_id_type}' + #end if + #if $cluster_extend + --cluster-extend '${cluster_extend}' + #end if + #if $rank_prob_ratio + --rank-prob-ratio '${rank_prob_ratio}' + #end if ]]></command> <inputs> <param type="data" name="cds_object" label="CDS object" format="rdata" help="CDS object with expression data for training" /> |
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| diff -r 67e6c4455bb8 -r ad647e1d14dc garnett_macros.xml --- a/garnett_macros.xml Wed Apr 08 06:22:12 2020 -0400 +++ b/garnett_macros.xml Fri Apr 24 11:22:06 2020 -0400 |
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| @@ -4,7 +4,7 @@ <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.3">garnett-cli</requirement> + <requirement type="package" version="0.0.5">garnett-cli</requirement> <yield/> </requirements> </xml> @@ -21,7 +21,7 @@ <citations> <citation type="bibtex"> @article{, - url = {https://doi.org/10.1038/s41592-019-0535-3}, + url = {https://doi.org/10.1038/s41592-019-0535-3}, author = {Hannah A. Pliner and Jay Shendure and Cole Trapnell}, title = {Supervised classification enables rapid annotation of cell atlases}, journal = {Nature Methods} @@ -38,7 +38,7 @@ } </citation> <yield /> + <citation type="doi">10.1101/2020.04.08.032698</citation> </citations> </xml> </macros> - |