| Previous changeset 7:98b53d46e851 (2021-03-23) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 7599ef16dc8b83ee49236ed5bb229260c969b0ab |
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modified:
extract-partitions.xml macros.xml |
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| diff -r 98b53d46e851 -r adb3dd5a899f extract-partitions.xml --- a/extract-partitions.xml Tue Mar 23 21:30:56 2021 +0000 +++ b/extract-partitions.xml Mon Jun 17 11:46:55 2024 +0000 |
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| @@ -1,5 +1,6 @@ <tool id="khmer_extract_partitions" name="khmer: Extract partitions" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>Separate sequences that are annotated with partitions into grouped files</description> + <expand macro="bio_tools"/> <macros> <token name="@BINARY@">extract-partitions.py</token> <import>macros.xml</import> @@ -22,7 +23,7 @@ </command> <inputs> <expand macro="input_sequences_filenames" /> - <param argument="--max-size" name="max_size" type="integer" label="Max group size" value="1000000" + <param argument="--max-size" type="integer" label="Max group size" value="1000000" help="No more than this many number of sequences will be stored in each output"/> <param name="min_partition_size" type="integer" label="Min partition size" value="5" help="The minimum partition size worth keeping (--min-partition-size/-m)" /> @@ -31,8 +32,8 @@ </inputs> <outputs> <data name="distribution" format="txt" from_work_dir="output.dist" label="${tool.name} on ${on_string}: Partition size distribution" /> - <collection name="groups-of-partitions" type="list"> - <discover_datasets pattern="__name__" directory="output" /> + <collection name="groups-of-partitions" type="list" format="fasta"> + <discover_datasets pattern="__name__" directory="output" format="fasta"/> </collection> </outputs> <tests> |
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| diff -r 98b53d46e851 -r adb3dd5a899f macros.xml --- a/macros.xml Tue Mar 23 21:30:56 2021 +0000 +++ b/macros.xml Mon Jun 17 11:46:55 2024 +0000 |
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| @@ -2,6 +2,11 @@ <token name="@TOOL_VERSION@">3.0.0a3</token> <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">20.01</token> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">khmer</xref> + </xrefs> + </xml> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">khmer</requirement> |