| Previous changeset 51:e18f2d6c4dbe (2024-03-07) Next changeset 53:bdfa6a7c4543 (2024-03-07) |
|
Commit message:
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 44df75b3714aa9e02983e0b67ef43fc0eee4a8d4-dirty |
|
modified:
autogenJB2.py |
| b |
| diff -r e18f2d6c4dbe -r ae12977c0e5e autogenJB2.py --- a/autogenJB2.py Thu Mar 07 04:52:28 2024 +0000 +++ b/autogenJB2.py Thu Mar 07 06:41:01 2024 +0000 |
| [ |
| @@ -90,14 +90,17 @@ "style": {}, "style_labels": {}, } - track_conf = {} listtracks = trackList # foo.paf must have a foo_paf.fasta or fasta.gz to match tnames = [x[2] for x in listtracks] texts = [x[1] for x in listtracks] for i, track in enumerate(listtracks): + track_conf = {"trackfiles": [], "category": "autogenerated"} tpath, trext, trackname = track[:3] track_conf["dataset_id"] = trackname + useuri = "no" + if tpath.startswith('http://') or tpath.startswith('https://'): + useuri = "yes" if trext == "paf": refname = trackname + "_paf.fasta" refdat = [x[2] for x in listtracks if x[2] == refname] @@ -136,14 +139,7 @@ track_conf["format"] = trext track_conf["name"] = trackname track_conf["label"] = trackname - useu = tpath.startswith('http://') or tpath.startswith('https://') - useuri = 'no' - if useu: - useuri = 'yes' - track_conf["trackfiles"] = [ - (tpath, trext, useuri, trackname, {}), - ] - track_conf["category"] = "Autogenerated" + track_conf["trackfiles"].append((tpath, trext, useuri, trackname, {})) keys = jc.process_annotations(track_conf) if keys: |